Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_P07
         (579 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022976-11|AAC69080.1|  196|Caenorhabditis elegans Serpentine r...    29   1.8  
U13019-7|AAC24445.2|  689|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z66519-3|CAA91372.1|  634|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z66519-2|CAA91381.1|  634|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z67737-6|CAA91540.3|  399|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AF040661-3|AAG24226.1|  187|Caenorhabditis elegans Hypothetical ...    28   5.5  
Z46996-7|CAE17681.1|  152|Caenorhabditis elegans Hypothetical pr...    27   7.3  
U53146-1|AAA96111.1|  348|Caenorhabditis elegans Hypothetical pr...    27   9.6  
AL117204-16|CAB55130.1|  389|Caenorhabditis elegans Hypothetical...    27   9.6  
AF067949-8|AAX88812.1|  565|Caenorhabditis elegans Peroxisomal m...    27   9.6  
AF067949-7|AAO25995.2|  626|Caenorhabditis elegans Peroxisomal m...    27   9.6  
AF067949-6|AAC19238.1|  598|Caenorhabditis elegans Peroxisomal m...    27   9.6  
AC024696-1|AAK84516.1|  348|Caenorhabditis elegans Hypothetical ...    27   9.6  

>AF022976-11|AAC69080.1|  196|Caenorhabditis elegans Serpentine
           receptor, class w protein108 protein.
          Length = 196

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/46 (28%), Positives = 29/46 (63%)
 Frame = -1

Query: 273 LLLITSLLAIHSTVQRTRRASKSLICSLRMSSYTTKASTFLTNSTF 136
           ++++ ++L +H+ + + ++A K    SLR + +TTK   F+T + F
Sbjct: 58  VIIVLTILLLHA-LNKAKKARKKKKSSLRDTDHTTKLVVFMTAAFF 102


>U13019-7|AAC24445.2|  689|Caenorhabditis elegans Hypothetical
           protein T12A2.6 protein.
          Length = 689

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 21/69 (30%), Positives = 29/69 (42%)
 Frame = +3

Query: 177 TKTSLKNILGSLKHVESAGRSNG*PKGLLSITKASNGVRSWLLDSNGYTKTKNWNGYPPS 356
           T   L  IL +++ +  +  S      L  I+K S   R WL   + +    N N  PPS
Sbjct: 492 TNEDLNEILKTVRDIYRSSNSASIFMLLSDISKLSRDAR-WLDSWSAFRAIHNLNNGPPS 550

Query: 357 VPLGNINLF 383
            PL    LF
Sbjct: 551 YPLSLAALF 559


>Z66519-3|CAA91372.1|  634|Caenorhabditis elegans Hypothetical
           protein B0334.3b protein.
          Length = 634

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 233 TVEWIAKRLVINNKGLKWCQIMATRFKRIYENKELEWIST 352
           T++   K LVI  KG  W +  AT+ ++     +L W++T
Sbjct: 267 TLKSAKKPLVIVGKGAAWSERGATQVQQFLTKSKLPWLAT 306


>Z66519-2|CAA91381.1|  634|Caenorhabditis elegans Hypothetical
           protein B0334.3a protein.
          Length = 634

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 233 TVEWIAKRLVINNKGLKWCQIMATRFKRIYENKELEWIST 352
           T++   K LVI  KG  W +  AT+ ++     +L W++T
Sbjct: 267 TLKSAKKPLVIVGKGAAWSERGATQVQQFLTKSKLPWLAT 306


>Z67737-6|CAA91540.3|  399|Caenorhabditis elegans Hypothetical
           protein T01H10.7 protein.
          Length = 399

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = +1

Query: 319 IRKQRTGMDIHLQYLLATSIYLACIQNLQTYTTELFLRLI 438
           +RK ++ M+  L+Y+L   +   C+  L+ + T +F+ +I
Sbjct: 353 LRKNKSKMNQKLEYVLGEPLETICMVILEIFNTAIFMVMI 392


>AF040661-3|AAG24226.1|  187|Caenorhabditis elegans Hypothetical
           protein W10G11.1 protein.
          Length = 187

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 300 LLDSNGYTKTKNWNGYPPSVP 362
           LLD+     +KNWN YP  +P
Sbjct: 109 LLDARASECSKNWNPYPKEIP 129


>Z46996-7|CAE17681.1|  152|Caenorhabditis elegans Hypothetical
           protein C34C12.9 protein.
          Length = 152

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -1

Query: 219 RASKSLICSLRMSSYTTKASTFLTNSTFPLTFLKPMMFLNNKRC 88
           R+S     SLR    T   ST  T S+ P + + P MF N+++C
Sbjct: 77  RSSTGFYSSLRNLFSTGNPSTTTTISSIPESHINP-MFANHEKC 119


>U53146-1|AAA96111.1|  348|Caenorhabditis elegans Hypothetical
           protein ZC411.1 protein.
          Length = 348

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 372 INLFGMHSKPSDIYNGTFPSSNNFMRSVNG 461
           INL      P  ++ GT+  + NF++ V G
Sbjct: 235 INLLTGQKPPETVFQGTYVETRNFLKIVRG 264


>AL117204-16|CAB55130.1|  389|Caenorhabditis elegans Hypothetical
           protein Y116A8C.25 protein.
          Length = 389

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/48 (22%), Positives = 25/48 (52%)
 Frame = -3

Query: 577 KENWHKFYELDWFTHKITPGQNKIVRNSNEFSLFKEDSLPLTDLMKLL 434
           + +W + +E  +  H++ P  ++++   N+  LF+   +  T   KLL
Sbjct: 150 ENDWTETWEEFFIRHRLKPQIDRLIETHNDRQLFELSEILYTKTAKLL 197


>AF067949-8|AAX88812.1|  565|Caenorhabditis elegans Peroxisomal
           membrane protein relatedprotein 5, isoform c protein.
          Length = 565

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -3

Query: 310 ESSSHDLTPFEAFVIDNKPFGYPFDRPADSTCFKEPNMFFKDVFVYHEG 164
           ES+ +    FE  V  +  F   F R  +  C++ P+ FF+  F Y+ G
Sbjct: 233 ESAFYKSAEFE-HVFSDLSFDVLFKRLLNFMCWRFPSQFFQSFFDYYGG 280


>AF067949-7|AAO25995.2|  626|Caenorhabditis elegans Peroxisomal
           membrane protein relatedprotein 5, isoform b protein.
          Length = 626

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -3

Query: 310 ESSSHDLTPFEAFVIDNKPFGYPFDRPADSTCFKEPNMFFKDVFVYHEG 164
           ES+ +    FE  V  +  F   F R  +  C++ P+ FF+  F Y+ G
Sbjct: 233 ESAFYKSAEFE-HVFSDLSFDVLFKRLLNFMCWRFPSQFFQSFFDYYGG 280


>AF067949-6|AAC19238.1|  598|Caenorhabditis elegans Peroxisomal
           membrane protein relatedprotein 5, isoform a protein.
          Length = 598

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -3

Query: 310 ESSSHDLTPFEAFVIDNKPFGYPFDRPADSTCFKEPNMFFKDVFVYHEG 164
           ES+ +    FE  V  +  F   F R  +  C++ P+ FF+  F Y+ G
Sbjct: 233 ESAFYKSAEFE-HVFSDLSFDVLFKRLLNFMCWRFPSQFFQSFFDYYGG 280


>AC024696-1|AAK84516.1|  348|Caenorhabditis elegans Hypothetical
           protein F07B7.7 protein.
          Length = 348

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 372 INLFGMHSKPSDIYNGTFPSSNNFMRSVNG 461
           INL      P  ++ GT+  + NF++ V G
Sbjct: 235 INLLTGQKPPETVFQGTYVETRNFLKIVRG 264


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,911,427
Number of Sequences: 27780
Number of extensions: 276635
Number of successful extensions: 778
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)