Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_P06
(669 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom... 93 3e-20
SPAC977.16c |dak2||dihydroxyacetone kinase Dak2 |Schizosaccharom... 89 5e-19
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 28 1.4
SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces po... 27 2.4
SPBC725.10 |||tspO homolog|Schizosaccharomyces pombe|chr 2|||Manual 26 4.3
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c... 25 7.5
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch... 25 9.9
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 25 9.9
SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces pomb... 25 9.9
>SPAC22A12.11 |dak1||dihydroxyacetone kinase
Dak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 93.1 bits (221), Expect = 3e-20
Identities = 50/133 (37%), Positives = 76/133 (57%), Gaps = 3/133 (2%)
Frame = +2
Query: 269 FVGSGMLNGAVAGGVFASPPTGHVLYAIAELHKYHSGGVLVIIGNYTGDRLNFGKAIEKA 448
FVG GML AV+G +FASP + + I ++ G LVI NYTGD L+FG A+EK
Sbjct: 63 FVGKGMLTAAVSGSIFASPSSKQIYTGIKQVES--EAGTLVICKNYTGDILHFGMALEKQ 120
Query: 449 KVAGMKVEGVIVGEDVASSKNKT---GGRSMVGEVLFYKLSGAMSNKGYNLSEIRDLVVE 619
+ AG K E + V +DV+ + K+ G R + G VL +K++GA + +G L + +
Sbjct: 121 RTAGKKAELIAVADDVSVGRKKSGKVGRRGLSGTVLVHKIAGAAAARGLPLEAVTTIAKA 180
Query: 620 ANKYMATLGVCLS 658
A + ++G L+
Sbjct: 181 AIDNLVSIGASLA 193
>SPAC977.16c |dak2||dihydroxyacetone kinase Dak2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 591
Score = 89.0 bits (211), Expect = 5e-19
Identities = 49/136 (36%), Positives = 74/136 (54%), Gaps = 3/136 (2%)
Frame = +2
Query: 269 FVGSGMLNGAVAGGVFASPPTGHVLYAIAELHKYHSGGVLVIIGNYTGDRLNFGKAIEKA 448
FVG G L+ G +FASP T + A+ + G L+I+ NYTGD ++FG A E+A
Sbjct: 68 FVGDGALDAVACGDIFASPSTKQIYSALKAVAS--PKGTLIIVKNYTGDIIHFGLAAERA 125
Query: 449 KVAGMKVEGVIVGEDVASSKNK---TGGRSMVGEVLFYKLSGAMSNKGYNLSEIRDLVVE 619
K AGM VE V VG+DV+ K + G R + VL +K++G+ + G +L ++ +
Sbjct: 126 KAAGMNVELVAVGDDVSVGKKRGALVGRRGLGATVLVHKIAGSAAALGLDLHQVAQVAQS 185
Query: 620 ANKYMATLGVCLSACS 667
AT+ L C+
Sbjct: 186 VIDNAATIAASLDHCA 201
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -2
Query: 200 PYSDDSMLRM*RSRAMQRPPHEDMS 126
P SDD LR+ R+R ++ P E++S
Sbjct: 246 PLSDDEWLRLHRTRIKEKQPEEEVS 270
>SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 269 FVGSGMLNGAVAGGVFASPPTGHVLYAIA 355
FV L AVA G+ S PTG Y+++
Sbjct: 226 FVNDKFLTEAVADGLIISTPTGSTAYSLS 254
>SPBC725.10 |||tspO homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 162
Score = 26.2 bits (55), Expect = 4.3
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 531 WLEKFYFISYPALCLTKATIYQRSATWLSKLINIWPLS 644
W+ FY ++ P L L I WL+K WPL+
Sbjct: 101 WMPLFYGLAKPKLALADLGILTGLVGWLAK--TWWPLA 136
>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 25.4 bits (53), Expect = 7.5
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = -1
Query: 396 IITKTPPE*YLCSSAIAYKTCPVGGEANTPPATAPFSMPEPTNLKQTVHDRIPASQNGDF 217
I+T P + S+A + + G NT P+ F+ ++L+ + R P NG F
Sbjct: 129 ILTPKNPSLFSSSNAASQR-----GSLNTAPSN--FAYSHSSSLQTSASSRPPVLSNGSF 181
Query: 216 P 214
P
Sbjct: 182 P 182
>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
subfamily|Schizosaccharomyces pombe|chr 1|||Manual
Length = 887
Score = 25.0 bits (52), Expect = 9.9
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 76 NVEQTDHEKHKLSKSCVDISSW 141
N ++T+ KH +S DI SW
Sbjct: 749 NKDETNFRKHNAKRSKTDIRSW 770
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -2
Query: 308 HRPQRHSACQNRQT*SKRFMTGSPPPKMATFPVSS 204
H PQ S+ + +K F + PPP + T SS
Sbjct: 12 HLPQSSSSLSQSREIAKEFTSNIPPPTIKTNSSSS 46
>SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 25.0 bits (52), Expect = 9.9
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +2
Query: 494 VASSKNKTGGRSMVGEVLFYKLSGAMSNKGYNLSEIRDLVVEANKYMATLG 646
VAS + R+ + Y LS +SN +E + VVEAN M+ LG
Sbjct: 255 VASIAGRYIARACKDTLEKYALSAILSNTRGVCTEAFENVVEANTLMSGLG 305
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,952,569
Number of Sequences: 5004
Number of extensions: 66063
Number of successful extensions: 179
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -