Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_P06
(669 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0934 - 28935728-28935859,28936000-28936122,28936172-289362... 110 8e-25
11_05_0070 + 18818127-18818404,18818492-18818532,18818691-188189... 32 0.36
12_02_0466 + 19403855-19404347,19404359-19404582,19404659-194050... 31 0.83
02_04_0335 + 22117902-22119869 31 1.1
12_02_0754 - 22817277-22817657,22817796-22817927,22818026-228182... 29 3.3
09_01_0040 + 744733-745269 29 3.3
06_03_0609 + 22710442-22713502,22713596-22713948 29 3.3
12_01_0857 - 8043765-8043839,8044215-8044497,8044578-8044748,804... 29 4.4
04_03_0559 + 17118319-17118396,17119329-17119467,17119569-171196... 29 4.4
07_01_0866 - 7195305-7195756,7197171-7197447 28 5.9
05_01_0025 - 171012-171263,171361-171450,171536-171592,171907-17... 28 5.9
01_01_0085 - 639959-640192,640290-640379,640465-640521,640826-64... 28 5.9
>03_05_0934 -
28935728-28935859,28936000-28936122,28936172-28936284,
28936363-28936430,28936517-28936600,28936937-28936980,
28937061-28937204,28937518-28937582,28937722-28937814,
28938132-28938262,28938375-28938394,28938904-28938987,
28939157-28939330,28940106-28940195,28940293-28940364,
28941318-28941365,28941458-28941570,28942786-28942849,
28942943-28943016,28943162-28943201
Length = 591
Score = 110 bits (265), Expect = 8e-25
Identities = 60/135 (44%), Positives = 84/135 (62%), Gaps = 2/135 (1%)
Frame = +2
Query: 269 FVGSGMLNGAVAGGVFASPPTGHVLYAIAELHKYHSGGVLVIIGNYTGDRLNFGKAIEKA 448
FVG GML AV+G VF SPP +L AI + G L+I+ NYTGDRLNFG A E+A
Sbjct: 72 FVGPGMLTAAVSGDVFTSPPVDSILAAIRAVTG--PMGCLLIVKNYTGDRLNFGLAAEQA 129
Query: 449 KVAGMKVEGVIVGEDVA--SSKNKTGGRSMVGEVLFYKLSGAMSNKGYNLSEIRDLVVEA 622
K G K+E VIVG+D A + G R + G +L +K++GA ++ G +L+E+ A
Sbjct: 130 KSEGYKMEMVIVGDDCALPPPRGIAGRRGLAGTILVHKVAGAAADAGLSLAEVAAEAKHA 189
Query: 623 NKYMATLGVCLSACS 667
++ + T+GV LS C+
Sbjct: 190 SEVVGTMGVALSVCT 204
>11_05_0070 +
18818127-18818404,18818492-18818532,18818691-18818990,
18820005-18820757,18820840-18820889
Length = 473
Score = 32.3 bits (70), Expect = 0.36
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = -1
Query: 360 SSAIAYKTCPVGGEANTPPATAPFSMPEP--TNLKQTVHDRIP 238
+S A + P G + PP T P +P+P NL + H+RIP
Sbjct: 390 ASTWAIQFLPYGNQIEWPPFTGPIIVPDPRQINLGRRQHNRIP 432
>12_02_0466 +
19403855-19404347,19404359-19404582,19404659-19405093,
19405180-19406024,19406353-19406635,19406903-19406977
Length = 784
Score = 31.1 bits (67), Expect = 0.83
Identities = 16/34 (47%), Positives = 17/34 (50%)
Frame = -1
Query: 321 EANTPPATAPFSMPEPTNLKQTVHDRIPASQNGD 220
E N P AP S P PT L QTV PA + D
Sbjct: 470 EINITPRPAPSSRPPPTRLHQTVVSLPPAVEQRD 503
>02_04_0335 + 22117902-22119869
Length = 655
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = +2
Query: 485 GEDVASSKNKTGGR-SMVGEVLFYKLSGAMSNKGYNLSEI 601
G +AS + + GG SM+G LF+ L GAM+N GY+ S +
Sbjct: 538 GTLMASQQRRAGGGGSMIGPGLFHGLVGAMNN-GYSSSGV 576
>12_02_0754 -
22817277-22817657,22817796-22817927,22818026-22818272,
22818473-22818909
Length = 398
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +1
Query: 214 GKVAILGGGDPVMNRLLQVCRFWHAEWRCGRWRIRFTTNWARLVRDSGTAQISLR 378
G + IL G D ++L R W WR + N R+ +D T + +LR
Sbjct: 40 GIITILPGKDAARTQVLS--RRWRPLWRSAPLNLEARVNGGRIAKDVATIRSTLR 92
>09_01_0040 + 744733-745269
Length = 178
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -1
Query: 366 LCSSAIAYKTCPVGGEANTPPATAPFSMPEPTNLKQTVHDRIP 238
LC A CP G E P++ P P+P L++ +H R+P
Sbjct: 55 LCGHAPPNNWCPWGREGRARPSSGP-RHPDP--LRRDLHQRLP 94
>06_03_0609 + 22710442-22713502,22713596-22713948
Length = 1137
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +2
Query: 512 KTGGRSMVGEVLFYKLSGAMSNKGYNLSEIRDLVVEANKYMATLGVCLSAC 664
K SMV ++ + LSG++S++ NL + L++ N+ + LS C
Sbjct: 606 KISSLSMVLDLSYNYLSGSISDEVGNLVNLNKLIISYNRLSGDIPSTLSQC 656
>12_01_0857 -
8043765-8043839,8044215-8044497,8044578-8044748,
8044826-8045670,8045828-8046262,8046339-8046563,
8046700-8046781,8046814-8047067
Length = 789
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -1
Query: 321 EANTPPATAPFSMPEPTNLKQTVHDRIPASQNGD 220
E N P AP S P PT+ QTV PA + D
Sbjct: 418 EINITPRPAPSSRPPPTHPHQTVVSLPPAVEQRD 451
>04_03_0559 +
17118319-17118396,17119329-17119467,17119569-17119660,
17119974-17120660
Length = 331
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/84 (20%), Positives = 37/84 (44%)
Frame = +2
Query: 350 IAELHKYHSGGVLVIIGNYTGDRLNFGKAIEKAKVAGMKVEGVIVGEDVASSKNKTGGRS 529
+++L+ + +GG+ + D ++ I A AG+ V G+ + ++S K G
Sbjct: 97 VSKLNLWKAGGLAEYVAASESDTVSRPAGISAADAAGLPVAGLTALQALSSIGTKFDGSG 156
Query: 530 MVGEVLFYKLSGAMSNKGYNLSEI 601
+VL S + L+++
Sbjct: 157 TGADVLITAASSGVGTYAVQLAKL 180
>07_01_0866 - 7195305-7195756,7197171-7197447
Length = 242
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -1
Query: 366 LCSSAIAYKTCPVGGEANTPPATAPFSMPEPTNLKQTVHDRIP 238
LC A CP G E P++ P P+P L++ +H R+P
Sbjct: 154 LCGHAPPNNWCPWGREGRARPSSGP-RHPDP--LRRDLHRRLP 193
>05_01_0025 -
171012-171263,171361-171450,171536-171592,171907-171939,
172050-172124,172219-172308,172421-172522,172725-172795,
173326-173479,173587-173663,174183-174219
Length = 345
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 272 VGSGMLNGAVAGGVFASPPTGHVLYAIAELHKYH 373
VGSG+L + GG P G VL A+ K H
Sbjct: 10 VGSGILGSVLVGGDAKLPSAGEVLSGAAKFVKKH 43
>01_01_0085 -
639959-640192,640290-640379,640465-640521,640826-640858,
640972-641046,641141-641230,641343-641444,641643-641713,
642243-642396,642497-642573,643077-643113
Length = 339
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 272 VGSGMLNGAVAGGVFASPPTGHVLYAIAELHKYH 373
VGSG+L + GG P G VL A+ K H
Sbjct: 10 VGSGILGSVLVGGDAKLPSAGEVLSGAAKFVKKH 43
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,073,126
Number of Sequences: 37544
Number of extensions: 484441
Number of successful extensions: 1410
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1408
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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