Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_P06
(669 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006693-10|AAF60376.1| 578|Caenorhabditis elegans Hypothetical... 99 1e-21
U88177-5|AAT48618.1| 515|Caenorhabditis elegans Acetylcholine r... 30 1.7
AY523512-1|AAR98634.1| 499|Caenorhabditis elegans acetylcholine... 30 1.7
AF490975-1|AAQ06433.1| 703|Caenorhabditis elegans ABC7 protein ... 29 3.0
AC024869-3|AAK68605.2| 452|Caenorhabditis elegans Synaptotagmin... 29 3.9
Z99281-37|CAJ44244.1| 740|Caenorhabditis elegans Hypothetical p... 28 5.2
Z92773-4|CAB07130.2| 584|Caenorhabditis elegans Hypothetical pr... 28 5.2
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 28 5.2
Z81114-8|CAB97236.1| 584|Caenorhabditis elegans Hypothetical pr... 28 5.2
AY611485-1|AAT37524.1| 740|Caenorhabditis elegans epidermal gro... 28 5.2
U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (dele... 28 6.9
AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein. 28 6.9
Z49937-8|CAD44113.1| 546|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z49867-4|CAD44109.1| 546|Caenorhabditis elegans Hypothetical pr... 27 9.1
U41108-2|AAQ23121.2| 639|Caenorhabditis elegans Tropomodulin pr... 27 9.1
>AC006693-10|AAF60376.1| 578|Caenorhabditis elegans Hypothetical
protein W02H5.8 protein.
Length = 578
Score = 99 bits (238), Expect = 1e-21
Identities = 57/131 (43%), Positives = 80/131 (61%), Gaps = 2/131 (1%)
Frame = +2
Query: 269 FVGSGMLNGAVAGGVFASPPTGHVLYAIAELHKYHSGGVLVIIGNYTGDRLNFGKAIEKA 448
+VG G+L A+AG VFASPP+ +V A+ E + +G +L +I NYTGDRLNFG A E+
Sbjct: 65 YVGKGLLTAAIAGNVFASPPSRNVQAAL-EATRGEAGAILFVI-NYTGDRLNFGLAAERF 122
Query: 449 KVAGMKVEGVIVGEDVA--SSKNKTGGRSMVGEVLFYKLSGAMSNKGYNLSEIRDLVVEA 622
+G V + +DVA S +K G R + G VL K++GAM+ +G +L EI + +
Sbjct: 123 NASGGTARVVTIADDVAIDSPNSKVGRRGLAGAVLTIKIAGAMAWEGKSLDEIYETSQKV 182
Query: 623 NKYMATLGVCL 655
M TLGV L
Sbjct: 183 VSSMGTLGVSL 193
>U88177-5|AAT48618.1| 515|Caenorhabditis elegans Acetylcholine
receptor protein17, isoform b protein.
Length = 515
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 19 DKLSRDKSELVNKF*YFKENVEQTDHEKHKLSKSCVDISS 138
DKLS K + N F F++ + +TD KH + S ++ S
Sbjct: 388 DKLSELKKKFANGFVQFQQKLLKTDEPKHNKTASLIEQES 427
>AY523512-1|AAR98634.1| 499|Caenorhabditis elegans acetylcholine
receptor, nicotinic,alpha 9 like (58.1 kD) alternative
variant a protein.
Length = 499
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 19 DKLSRDKSELVNKF*YFKENVEQTDHEKHKLSKSCVDISS 138
DKLS K + N F F++ + +TD KH + S ++ S
Sbjct: 372 DKLSELKKKFANGFVQFQQKLLKTDEPKHNKTASLIEQES 411
>AF490975-1|AAQ06433.1| 703|Caenorhabditis elegans ABC7 protein
protein.
Length = 703
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/70 (27%), Positives = 34/70 (48%)
Frame = +2
Query: 413 DRLNFGKAIEKAKVAGMKVEGVIVGEDVASSKNKTGGRSMVGEVLFYKLSGAMSNKGYNL 592
+ ++FG EK + G+ +E + VG+ VA G+S + +L+ N N
Sbjct: 437 ENVHFGYLPEKPILKGLDLE-IPVGKKVAIVGGSGSGKSTIVRLLYRLYDTESGNVRING 495
Query: 593 SEIRDLVVEA 622
E RDL +++
Sbjct: 496 LETRDLTLDS 505
>AC024869-3|AAK68605.2| 452|Caenorhabditis elegans Synaptotagmin
protein 3 protein.
Length = 452
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 566 RRITYKIKLLQPYYDHRFCFCSKLHPHQQLHL 471
++ T K+K L PYY+ F F Q++HL
Sbjct: 197 KKTTIKMKTLNPYYNESFSFDVTSEKMQRVHL 228
>Z99281-37|CAJ44244.1| 740|Caenorhabditis elegans Hypothetical
protein Y57G11C.24h protein.
Length = 740
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = -2
Query: 239 PPPKMATFPVSSYPYSDDSMLRM*RSRAMQRPPHEDMSTQDLE 111
PPP+ V + P + SM R +SR PPH +MS +LE
Sbjct: 482 PPPRERNM-VDTAPNTPQSMQRTPKSR----PPHRNMSVDNLE 519
>Z92773-4|CAB07130.2| 584|Caenorhabditis elegans Hypothetical
protein W08E3.2 protein.
Length = 584
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2
Query: 302 PQRHSACQNRQT*SKRFMTGSPPPKMA 222
PQ H+ N Q KRF+ G PPP +A
Sbjct: 484 PQHHNNHHNHQ--QKRFVQGPPPPMVA 508
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -2
Query: 347 RTRRAQLVVKRIRHRPQRHSACQNRQT*SKRFMTGSPPP 231
R RR+ R R PQR + + R++ S + SPPP
Sbjct: 479 RRRRSPAAAPRRRQSPQRRRSPRRRRSPSSSSRSRSPPP 517
>Z81114-8|CAB97236.1| 584|Caenorhabditis elegans Hypothetical
protein W08E3.2 protein.
Length = 584
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2
Query: 302 PQRHSACQNRQT*SKRFMTGSPPPKMA 222
PQ H+ N Q KRF+ G PPP +A
Sbjct: 484 PQHHNNHHNHQ--QKRFVQGPPPPMVA 508
>AY611485-1|AAT37524.1| 740|Caenorhabditis elegans epidermal growth
factor receptorpathway substrate 8 splice variant B
protein.
Length = 740
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = -2
Query: 239 PPPKMATFPVSSYPYSDDSMLRM*RSRAMQRPPHEDMSTQDLE 111
PPP+ V + P + SM R +SR PPH +MS +LE
Sbjct: 482 PPPRERNM-VDTAPNTPQSMQRTPKSR----PPHRNMSVDNLE 519
>U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (deleted
in azoospermia)homolog protein 1 protein.
Length = 498
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -3
Query: 298 SAIQHARTDKPEANGS*PDPRLPKWRLSQYHLIPI 194
S I+ ART++P ++ S PD + K HL P+
Sbjct: 448 SPIKGARTERPSSSASTPDAKYQKNHRYPVHLSPL 482
>AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein.
Length = 499
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -3
Query: 298 SAIQHARTDKPEANGS*PDPRLPKWRLSQYHLIPI 194
S I+ ART++P ++ S PD + K HL P+
Sbjct: 449 SPIKGARTERPSSSASTPDAKYQKNHRYPVHLSPL 483
>Z49937-8|CAD44113.1| 546|Caenorhabditis elegans Hypothetical
protein C33D3.5 protein.
Length = 546
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -3
Query: 493 ILTNNYTFNLHSGYFRLFNGFTKIQ 419
ILTNN T N+H G F L F I+
Sbjct: 35 ILTNNDTTNIHFGNFPLGESFFNIE 59
>Z49867-4|CAD44109.1| 546|Caenorhabditis elegans Hypothetical
protein C33D3.5 protein.
Length = 546
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -3
Query: 493 ILTNNYTFNLHSGYFRLFNGFTKIQ 419
ILTNN T N+H G F L F I+
Sbjct: 35 ILTNNDTTNIHFGNFPLGESFFNIE 59
>U41108-2|AAQ23121.2| 639|Caenorhabditis elegans Tropomodulin
protein 2, isoform b protein.
Length = 639
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = -1
Query: 429 PKFSLSPV*LPIITKTPPE*YLCSSAIAYKTCPVGGEANTPPATAPFSMPEP 274
PK SL+P P+I PP+ + ++++ E +T P ++PEP
Sbjct: 299 PKPSLAPKAAPVIATAPPKSTILMKQLSFQRASRESEEDTEFVPPP-AVPEP 349
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,435,461
Number of Sequences: 27780
Number of extensions: 374394
Number of successful extensions: 1078
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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