Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_P05
         (371 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch...   176   8e-46
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    26   1.6  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    26   1.6  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    25   3.8  
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc...    25   5.0  
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces...    24   6.7  
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar...    24   8.8  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    24   8.8  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    24   8.8  

>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 382

 Score =  176 bits (429), Expect = 8e-46
 Identities = 83/122 (68%), Positives = 95/122 (77%)
 Frame = +2

Query: 5   LDEKTVIHINPCGLFIIGGPQSDAGLTGRKIIVDTYXXXXXXXXXXXXXKDFTKVDRSAA 184
           LDEKTV HI P G F++GGPQ DAGLTGRKIIVDTY             KD++KVDRSAA
Sbjct: 223 LDEKTVYHIQPSGRFVVGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYSKVDRSAA 282

Query: 185 YAARWVAKSLVKAGLCRRCMVQVAYAIGVAEPLSITVFDYGTSHKTQQQLLSIVKKNFDL 364
           YAARW+AKSLV AGL RRC+VQ++YAIGVAEPLSI V  YGTS KT  +L+ I++KNFDL
Sbjct: 283 YAARWIAKSLVAAGLARRCLVQLSYAIGVAEPLSIFVNTYGTSSKTSAELVEIIRKNFDL 342

Query: 365 RP 370
           RP
Sbjct: 343 RP 344


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
            Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -2

Query: 139  APTMSSPPTIRIDDDLTSSQTSVRLRSTNDEESARVD 29
            APT SS     +D  +++++ S R +   +EE+ R D
Sbjct: 1221 APTKSSTRQTTLDGSISNTKKSSRTKKKKEEETNRGD 1257


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 11/26 (42%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = +3

Query: 267 ELQSHSQLPYSTTALRTKHNN-SFSP 341
           +L +HS+LP  T++  +KH + +FSP
Sbjct: 277 DLPTHSRLPSRTSSFSSKHRSVTFSP 302


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 25  PHQPVRTLHHWWTSV*RWFDWT 90
           P+ P + +HH+W  V  WFD T
Sbjct: 584 PNGPPKYIHHFW--VHTWFDKT 603


>SPAC12G12.10 |||WD repeat protein, human WDR21
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 420

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +2

Query: 194 RWVAKSLVKAGLCRRCMVQVAYAIGVAEPLSI 289
           RW +  L+K  LC   + ++ +A+G    ++I
Sbjct: 208 RWGSLKLLKTPLCAESIGEMGFAVGGTSKIAI 239


>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
 Frame = -2

Query: 199 PSGSIGS*TVHLGEVLPGESAPTMSSPPTIRIDDDLTSSQTSVRLRSTNDEE----SARV 32
           P+  +GS    LG  +       +S+     ID+    S  S +LR T  EE    + RV
Sbjct: 27  PTSHVGSVLRSLGINVTDAELAKLSNELGDAIDEKKFMSFVSNKLRETESEEEYIKAFRV 86

Query: 31  -DVDNSFFIE 5
            D DNS +IE
Sbjct: 87  FDKDNSGYIE 96


>SPAC1B3.17 |clr2||chromatin silencing protein
           Clr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 339 ERSCCCVLC 313
           E +CCCVLC
Sbjct: 190 ESTCCCVLC 198


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 279 HSQLPYSTTALRTKHNNSFS 338
           HS +  S T+L  +H NSFS
Sbjct: 51  HSPILESPTSLNRQHRNSFS 70


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +3

Query: 252 SHTPLE-LQSHSQLPYSTTALRTKHNNSF 335
           SH+P   LQS   +P ST A + +  N+F
Sbjct: 176 SHSPSPFLQSSQHIPPSTPAQKLRKKNNF 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,557,339
Number of Sequences: 5004
Number of extensions: 29127
Number of successful extensions: 68
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)