Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_P05
         (371 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.5  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   2.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   3.5  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   4.7  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   4.7  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 134 HHELPTHHTYRR*SYVQSNQRQTEVHQ 54
           HH L  HH + + + VQ + R  +  Q
Sbjct: 141 HHHLQNHHHHLQSTAVQDHHRPYQQQQ 167


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 6/17 (35%), Positives = 14/17 (82%)
 Frame = -2

Query: 142 SAPTMSSPPTIRIDDDL 92
           ++PT+S+PPT+ + + +
Sbjct: 27  ASPTLSTPPTLNLMEQI 43


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = -2

Query: 193  GSIGS*TVHLGEVLPGESAPTMSSPPTIRIDDDLTSSQTSVRLRSTNDEESARVDVD 23
            GS+G  +V     +P   +P    PP    D + +S   S   + +N+   A  D D
Sbjct: 1838 GSVGRRSVGSARNIPVSGSPEPPPPPPRNHDQNNSSFNDS---KESNEISEAECDRD 1891


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 13/54 (24%), Positives = 26/54 (48%)
 Frame = -2

Query: 175 TVHLGEVLPGESAPTMSSPPTIRIDDDLTSSQTSVRLRSTNDEESARVDVDNSF 14
           T+H+     G +   ++S  T +I DD+ ++ T   +   +  ES    +D+ F
Sbjct: 174 TIHIASWSHGSNEIKLNSLDTEQILDDMYNNNTEWEIVHMSHSEST---IDSKF 224


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic
          acetylcholine receptor alpha3subunit protein.
          Length = 566

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 54 MMKSPHGLMWITV 16
          MMKS  G+MWI +
Sbjct: 1  MMKSLVGIMWIVL 13


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,126
Number of Sequences: 438
Number of extensions: 2138
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8928360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)