Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_P04
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    29   0.43 
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      28   1.3  
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    27   2.3  
SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr 2...    27   3.0  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   5.3  
SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2 |...    25   7.0  
SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces po...    25   9.2  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   9.2  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    25   9.2  

>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = -2

Query: 496 DDEHLERQTAEGSER*QKPVRKAKATLIPPTLDALE----TCSSCVETFFQYVFSPRSLF 329
           +DEHL  Q +   E  ++P+    +T  P   DA      + SS  +   Q  FSPRS  
Sbjct: 447 EDEHLNLQGSFIEESTKQPISSKPSTSSPDMTDAATGGRVSSSSFRDKILQTNFSPRSTI 506

Query: 328 DNAVHLER 305
           D+  ++ +
Sbjct: 507 DSFSNISK 514


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 19/60 (31%), Positives = 32/60 (53%)
 Frame = +2

Query: 224 NDKRLDMLEIDSFVYKLDTGKNNIVRSSLEMHGVIEQRPWTKNILEKGFDTTGTGFKSIE 403
           N K L+ + + SFV      K+N +++S E+  +IE+  + KN++   F     G KS E
Sbjct: 754 NYKSLESIGLTSFV------KDNKLKASKELQKLIEENVFPKNLILFIFRKCVIGIKSFE 807


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 347 KNILEKGFDTTGTGFKSIESWWYKSRLG 430
           KNI +  F+TTG G K +E   YK   G
Sbjct: 106 KNIPKMKFNTTGFGAKMLEKMGYKQGQG 133


>SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 228

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 597 ALCRNIHFHRQAYLAFIVDISIDGKTIPVL 508
           +LC   H H+ AY A ++    D  TIP L
Sbjct: 170 SLCLMAHPHQLAYAALLISCCNDENTIPKL 199


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 162  TQSFVYLLVPNTIAWAAS*ASMTNALTCSKSIASSINSTL 281
            TQS  Y    +T+ W+ S    T+    S+ +++  NST+
Sbjct: 3866 TQSVYYNATSSTVPWSNSTFRNTSNTMTSRFVSNDFNSTI 3905


>SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/52 (23%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = -2

Query: 355 YVFSPRSLFDNAVHLERAADDVVLTSVEFIDEAIDF--EHVKAFVIDAHEAA 206
           +V   +  +D+++H  R   D++L   E ID A+ F  +H++  + + ++ +
Sbjct: 152 FVTLSKPAYDSSIHPTRENADIILPQKENIDTALLFVSQHLQDILAEMNKTS 203


>SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 99  CGVLITSLSRCLSMLCQIRLLTQSFVYLLVPNTIAWAA 212
           CG++  SL         +RLL  + VY      IAWA+
Sbjct: 203 CGLIANSLFN--DTFSSLRLLDDNSVYTFSTKNIAWAS 238


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -2

Query: 220  AHEAAHAIVFGTNKYTNDCVNSLI*HNIDRHLERL 116
            A E  +A   G NKY N+ V SLI  N   H   L
Sbjct: 1147 ATEIHYAASVGQNKYLNEYVASLIRTNEKTHSTEL 1181


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 409 PTLDALETCSSCVETFFQYVFSPRSLFDNAVHLER 305
           P+LD  ETCS+ V       FSP ++  N   + R
Sbjct: 27  PSLDYFETCSNFVPRAGIPTFSPYAVIKNFDEVNR 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,678,564
Number of Sequences: 5004
Number of extensions: 53586
Number of successful extensions: 175
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)