Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_P04
         (638 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ...    32   0.30 
Z50858-6|CAD44135.1|  949|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AL021567-6|CAD44122.1|  949|Caenorhabditis elegans Hypothetical ...    30   1.6  
AL021567-2|CAD44121.1|  947|Caenorhabditis elegans Hypothetical ...    30   1.6  
AL021567-1|CAA16508.2|  898|Caenorhabditis elegans Hypothetical ...    30   1.6  
AF045639-8|AAC02566.1|  649|Caenorhabditis elegans Hypothetical ...    28   4.9  
AF047656-8|AAC05109.2|  340|Caenorhabditis elegans Ligand-gated ...    27   8.6  
AC006832-4|AAF39996.1|  485|Caenorhabditis elegans Hypothetical ...    27   8.6  

>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
            protein F39C12.1 protein.
          Length = 5105

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = -3

Query: 474  KPPR--VPRGNRSLCGKPRRLLYHQLSMLLKPVPVVSKPFSNMFLVHGLCSITPCISSEL 301
            KPP+  VP+G ++     +R  Y +L    KP P    P S      G+ + TP I    
Sbjct: 3405 KPPQLEVPQGVQTYNPPSQRKYYTRLGREWKPPPKAKTPLSIRVPQSGVSTSTPAIDLSA 3464

Query: 300  RTMLFLPV 277
            + +L  P+
Sbjct: 3465 KEVLLAPI 3472


>Z50858-6|CAD44135.1|  949|Caenorhabditis elegans Hypothetical
           protein F21A10.2c protein.
          Length = 949

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/53 (28%), Positives = 29/53 (54%)
 Frame = +2

Query: 5   MDEYDMDITNALYLDQAEMQKKKSDMVYVARMRRLNHQPFKVSIDVMSDKAVD 163
           + E  M I     ++++ ++K+K   +++   R L + P +V IDV S K V+
Sbjct: 805 LPELGMQIDERYCIEKSCVKKRKVYSLFIPMTRYLPNVPLEVQIDVPSSKVVN 857


>AL021567-6|CAD44122.1|  949|Caenorhabditis elegans Hypothetical
           protein F21A10.2c protein.
          Length = 949

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/53 (28%), Positives = 29/53 (54%)
 Frame = +2

Query: 5   MDEYDMDITNALYLDQAEMQKKKSDMVYVARMRRLNHQPFKVSIDVMSDKAVD 163
           + E  M I     ++++ ++K+K   +++   R L + P +V IDV S K V+
Sbjct: 805 LPELGMQIDERYCIEKSCVKKRKVYSLFIPMTRYLPNVPLEVQIDVPSSKVVN 857


>AL021567-2|CAD44121.1|  947|Caenorhabditis elegans Hypothetical
           protein F21A10.2b protein.
          Length = 947

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/53 (28%), Positives = 29/53 (54%)
 Frame = +2

Query: 5   MDEYDMDITNALYLDQAEMQKKKSDMVYVARMRRLNHQPFKVSIDVMSDKAVD 163
           + E  M I     ++++ ++K+K   +++   R L + P +V IDV S K V+
Sbjct: 803 LPELGMQIDERYCIEKSCVKKRKVYSLFIPMTRYLPNVPLEVQIDVPSSKVVN 855


>AL021567-1|CAA16508.2|  898|Caenorhabditis elegans Hypothetical
           protein F21A10.2a protein.
          Length = 898

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/53 (28%), Positives = 29/53 (54%)
 Frame = +2

Query: 5   MDEYDMDITNALYLDQAEMQKKKSDMVYVARMRRLNHQPFKVSIDVMSDKAVD 163
           + E  M I     ++++ ++K+K   +++   R L + P +V IDV S K V+
Sbjct: 754 LPELGMQIDERYCIEKSCVKKRKVYSLFIPMTRYLPNVPLEVQIDVPSSKVVN 806


>AF045639-8|AAC02566.1|  649|Caenorhabditis elegans Hypothetical
           protein B0212.1 protein.
          Length = 649

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 508 DGSHDDEHLERQTAEGS 458
           DGSH+DEH E++   GS
Sbjct: 332 DGSHEDEHFEKKIMPGS 348


>AF047656-8|AAC05109.2|  340|Caenorhabditis elegans Ligand-gated ion
           channel protein 5 protein.
          Length = 340

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +1

Query: 547 YEGEIRLSVEVYVSTQCP 600
           Y GEIR S+   VST CP
Sbjct: 136 YNGEIRTSLPAVVSTSCP 153


>AC006832-4|AAF39996.1|  485|Caenorhabditis elegans Hypothetical
           protein ZK355.4 protein.
          Length = 485

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -2

Query: 262 EAIDFEHVKAFVIDAHEAAHAIVFGTNKYTNDCVNSLI*HNI 137
           E +DF +  A+VI    A  AI+  +NKY  + + + + H I
Sbjct: 402 EGLDFLYKLAYVIAPDAARPAILIRSNKYLKNAILASLEHAI 443


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,954,178
Number of Sequences: 27780
Number of extensions: 306506
Number of successful extensions: 997
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)