Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_O20
         (306 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    25   2.5  
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo...    25   3.3  
SPCC4B3.18 |||phosphopantothenate-cysteine ligase|Schizosaccharo...    24   5.8  

>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 112 SKTLIYQSSIKKLWKTTNIFTIFFVHAHSLFEMHLYSSSSV 234
           SK L   + I+K W   + FT +    H L E+ +  + S+
Sbjct: 391 SKKLFISNEIQKQWHKKDDFTEYEDIVHELIELPVVCAQSI 431


>SPBC800.09 |sum2||G2/M transition checkpoint protein
          Sum2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -1

Query: 96 LKHVVWCGSRG 64
          LKHV WCG+ G
Sbjct: 35 LKHVRWCGTEG 45


>SPCC4B3.18 |||phosphopantothenate-cysteine
           ligase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 316

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -3

Query: 217 TNAFQIKNGHEQKIW*IYWLFSITFLSSFDRSRSLTR 107
           TN F+  NG ++K W +   F  T  ++ +   + T+
Sbjct: 104 TNLFERSNGSQEKPWIVKQEFQSTVFNALNELDTYTK 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,308,522
Number of Sequences: 5004
Number of extensions: 23542
Number of successful extensions: 36
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)