Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_O19
(561 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces... 28 0.82
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 28 1.1
SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr ... 27 1.9
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch... 26 3.3
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 26 4.4
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 5.8
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 25 5.8
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 25 7.6
SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr... 25 7.6
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 25 7.6
>SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 28.3 bits (60), Expect = 0.82
Identities = 22/73 (30%), Positives = 34/73 (46%)
Frame = +1
Query: 226 FLDIFEKTFVQSLQKGKFESVRY*ILFYSYENICT*HLIDLTYVCFSMARKLISTDEQAI 405
F DI + +++Q KF S L+ S+ C DLT + F ARK + TD +
Sbjct: 20 FSDIEQPSYIQ-----KFPSQES--LYVSFFEQCAFDDFDLTLLRFLKARKFVVTDSSDM 72
Query: 406 NFVGNYWQENADL 444
W++ A+L
Sbjct: 73 LANAIVWRQQANL 85
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 27.9 bits (59), Expect = 1.1
Identities = 15/37 (40%), Positives = 25/37 (67%)
Frame = +2
Query: 2 LSIAVAKYITISTNN*QHVITSSVLQTAWVPYLNSLG 112
LSI+ AK TI + + + S++L T+W+ +LNS+G
Sbjct: 3546 LSISSAKLSTICRSVLKASVNSALL-TSWICFLNSIG 3581
>SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 251
Score = 27.1 bits (57), Expect = 1.9
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 142 LMTSYYFPFAQRPDNYNLHSVKNYEAIRFLD 234
L+ SYY PF DN ++ V YEA + +
Sbjct: 20 LLNSYYGPFYDDGDNTGVNVVDLYEAFKVFE 50
>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 681
Score = 26.2 bits (55), Expect = 3.3
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +2
Query: 215 KQYGSWTFLKRLSYSPYRKANSNRYVIKFYFTLMKTFV 328
+QY + TF+K + S ++ + Y++ FY + ++ FV
Sbjct: 253 RQYLTETFVKDCTSSILTASSDSSYILLFYVSTIRCFV 290
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 25.8 bits (54), Expect = 4.4
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +1
Query: 88 GSIPEFSWYSPIKTGYYPLMTSYYFPFAQRP 180
G P+ +Y P + YYP +Y P +P
Sbjct: 107 GGYPQQPYYYPNQPNYYPAQPAYAQPVYAQP 137
>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 557
Score = 25.4 bits (53), Expect = 5.8
Identities = 17/57 (29%), Positives = 23/57 (40%)
Frame = +1
Query: 31 NFYQQLTTRYYFERLTNGLGSIPEFSWYSPIKTGYYPLMTSYYFPFAQRPDNYNLHS 201
NFY + YF T G+ S+P F + YP S Y P P ++ S
Sbjct: 126 NFYPPIQNSTYFINATGGIDSMPYFG-LNNAPGNIYPF--SMYKPLEADPQYLSVPS 179
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 25.4 bits (53), Expect = 5.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 453 RRCYKEIISDLMKLSLAMCSVQHLKHSTS 539
+R YKE S L K+ + C + LK S S
Sbjct: 202 KRLYKERKSFLSKIEKSACEIHDLKESDS 230
>SPBC12C2.02c |ste20|ste16|sterility protein
Ste20|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1309
Score = 25.0 bits (52), Expect = 7.6
Identities = 10/39 (25%), Positives = 21/39 (53%)
Frame = +3
Query: 429 RERRSVLKRRCYKEIISDLMKLSLAMCSVQHLKHSTSTA 545
+ER+ +LK++C E+ S K+ + S++ + A
Sbjct: 73 KERKEMLKKKCTDELESSKKKIEELVSSIESFQGENGEA 111
>SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 747
Score = 25.0 bits (52), Expect = 7.6
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -2
Query: 515 HRAHGERQFHKIADNLFVTSSL*YRSAFSCQ*FPTKLIACSSV-EINFLAILKHT 354
H H E+ F +A N+ + SSL S TK + SS+ E + L+HT
Sbjct: 420 HPCHSEQAFGGVAHNMALASSLMGASTKLVSCVGTKSVPTSSIKEYLTKSSLQHT 474
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 25.0 bits (52), Expect = 7.6
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Frame = -1
Query: 180 RPLSEWEIV*SHQGIVTSLNR-----RVPREFRYGTQAVCKTLEVITC 52
RP + ++V SH+ I+++L + RVP YG KT ++ C
Sbjct: 30 RPANLEDVV-SHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILAC 76
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,279,285
Number of Sequences: 5004
Number of extensions: 45330
Number of successful extensions: 109
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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