Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_O19
         (561 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0022 - 15536811-15536899,15537485-15537664,15537706-155379...    29   3.4  
06_01_0469 + 3322886-3323564,3324033-3324953,3325025-3325155,332...    28   5.9  
10_08_0355 - 17131178-17131268,17131376-17131429,17131521-171316...    27   7.7  

>06_03_0022 -
           15536811-15536899,15537485-15537664,15537706-15537982,
           15538680-15538883,15539431-15539496,15539933-15539953,
           15541622-15541731,15543244-15544236,15544928-15544955,
           15545035-15545093,15545177-15545204,15545453-15545475,
           15545784-15545853,15546980-15547033,15547127-15547169,
           15548126-15548175
          Length = 764

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = +3

Query: 360 FQYGKKIDFH---G*TGN*LCRKLLARERRSVLKRRCYKEIISDLMKLSLAMCSVQHLKH 530
           FQ+G   D H   G  GN +   + A + RSV+ +RC +   +++++    +C    +  
Sbjct: 87  FQHGMDADKHHIFGERGNMIQLNMCASDGRSVVGQRCQRLGCNNVVEGQTLLCKSHSIGQ 146

Query: 531 STSTASCP 554
                 CP
Sbjct: 147 RCQMLGCP 154


>06_01_0469 +
           3322886-3323564,3324033-3324953,3325025-3325155,
           3325237-3325317,3328173-3328820
          Length = 819

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 226 TVLLRSSLRCVDCSCPAFERMG 161
           TVLL +S   + C C  FERMG
Sbjct: 388 TVLLDTSTMEISCGCRKFERMG 409


>10_08_0355 -
           17131178-17131268,17131376-17131429,17131521-17131663,
           17131812-17132096,17132168-17132301,17132383-17132556,
           17132639-17132707,17132814-17132878,17133441-17133589,
           17133747-17133989,17134119-17134255,17134340-17134561,
           17134661-17134827,17136680-17136819
          Length = 690

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = +1

Query: 184 NYNLHSV---KNYEAIRFLDIFEKTFVQSLQK 270
           NYN+  V   KN+ A+R  DIF KT  +  +K
Sbjct: 521 NYNIAIVSLKKNFNAVRLEDIFSKTVQEPSEK 552


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,870,089
Number of Sequences: 37544
Number of extensions: 250614
Number of successful extensions: 588
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)