Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_O18
         (369 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    30   0.13 
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   1.2  
SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...    25   3.7  
SPAC343.08c |mrp17||mitochondrial ribosomal protein subunit Mrp1...    25   3.7  
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    24   8.6  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    24   8.6  
SPCC553.07c |mug40||DinB translesion DNA repair polymerase|Schiz...    24   8.6  

>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 29.9 bits (64), Expect = 0.13
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 320 KKTSVPKKNSYLGQFPGLQSNELNTLIKMKYKL 222
           ++  VP+ NSY G FP + S  L T + + +++
Sbjct: 334 QRRQVPRSNSYAGAFPSVVSASLPTKVDLNHQM 366


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 20/61 (32%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
 Frame = -2

Query: 323 LKKTSVPKKNSYLGQFPGLQSNELNTLIKMKYKLYF----IKITLMKTGTGLAWPKSL*L 156
           LK   V  KN++L +   LQ   L         LYF     KI        LAW K L  
Sbjct: 790 LKPNEVQSKNNFLNKCTPLQKGMLYESFSNNGNLYFNHTVFKIAASPEKVKLAWEKLLDT 849

Query: 155 H 153
           H
Sbjct: 850 H 850


>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +1

Query: 136 ILCPKLWSQSDFGQASPVPVFIKVIL 213
           IL P LW++  FGQ +P+  +  +++
Sbjct: 223 ILTPNLWAERPFGQ-TPIEEYADILM 247


>SPAC343.08c |mrp17||mitochondrial ribosomal protein subunit
           Mrp17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 284 LNSCFSLEHWFSLTIY 331
           LN  +S  HW+S+T Y
Sbjct: 59  LNQSYSFGHWWSMTFY 74


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 9/37 (24%), Positives = 15/37 (40%)
 Frame = +2

Query: 44  IEKCAENCISTPEYNPVCGSDNKTYKNQGRLFCAQNC 154
           + K   NC S   +   C   +++   +   FC  NC
Sbjct: 185 VRKFCYNCASDEHFGDDCTLPSRSNYPESTAFCEANC 221


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 281 QFPGLQSNELNTLIKMKYKLY 219
           +FPG+QS+ +   I + Y+LY
Sbjct: 631 RFPGIQSSIMAYTISVTYELY 651


>SPCC553.07c |mug40||DinB translesion DNA repair
           polymerase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 54  ARRIAFQHQNTTPCVV 101
           A ++ FQ QNT PC V
Sbjct: 479 AMQLKFQSQNTVPCPV 494


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,559,465
Number of Sequences: 5004
Number of extensions: 31107
Number of successful extensions: 74
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)