Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_O18
(369 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0956 + 7374273-7374356,7374502-7374963,7375043-7375673,737... 33 0.053
06_01_1147 + 9606860-9606989,9607078-9607811,9607890-9608126,960... 33 0.093
04_01_0048 + 522423-522552,522641-523374,523453-524828,528100-52... 33 0.093
04_03_0574 - 17338777-17339077,17339390-17340222,17340304-173407... 31 0.21
08_01_0978 + 9841441-9842169,9842303-9842590,9842768-9843612,984... 31 0.37
04_03_0472 - 16316440-16316740,16317046-16317614 30 0.49
07_01_0917 + 7735696-7735896,7735907-7736404,7736481-7736813,773... 29 1.1
03_04_0008 - 16274158-16274458,16274791-16275623,16275706-162761... 29 1.1
10_08_0038 - 14336633-14336864,14336970-14337187,14337302-14339020 28 2.0
10_08_0041 - 14374684-14377339,14377371-14378233 27 3.5
09_02_0240 - 6157855-6157891,6158040-6158329 27 4.6
07_03_1769 + 29377784-29377878,29377993-29378180,29378340-293784... 27 6.1
12_02_0466 + 19403855-19404347,19404359-19404582,19404659-194050... 26 8.1
08_02_1323 - 26136015-26137876,26138300-26139229,26139922-261400... 26 8.1
>06_01_0956 +
7374273-7374356,7374502-7374963,7375043-7375673,
7375806-7375875,7376208-7376508
Length = 515
Score = 33.5 bits (73), Expect = 0.053
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +2
Query: 272 LETGLNSCFSLEHWFSLTIYFMLKRV*YL 358
L+TGL C+SL+HW L I RV YL
Sbjct: 406 LDTGLLKCYSLQHWILLVIVPKWSRVTYL 434
>06_01_1147 +
9606860-9606989,9607078-9607811,9607890-9608126,
9608433-9609265,9609598-9609856,9610294-9610377,
9610484-9610498
Length = 763
Score = 32.7 bits (71), Expect = 0.093
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +2
Query: 272 LETGLNSCFSLEHWFSLTIYFMLKRV*YL 358
L+TGL C+SL HW L I RV YL
Sbjct: 635 LDTGLLKCYSLRHWILLVIVPKWSRVTYL 663
>04_01_0048 +
522423-522552,522641-523374,523453-524828,528100-528400
Length = 846
Score = 32.7 bits (71), Expect = 0.093
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +2
Query: 272 LETGLNSCFSLEHWFSLTIYFMLKRV*YL 358
L+TGL C+SL HW L I RV YL
Sbjct: 737 LDTGLLKCYSLRHWILLVIVPKWSRVTYL 765
>04_03_0574 -
17338777-17339077,17339390-17340222,17340304-17340765,
17340843-17341030,17341244-17341576,17341665-17341796,
17342604-17342643
Length = 762
Score = 31.5 bits (68), Expect = 0.21
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 272 LETGLNSCFSLEHWFSLTIYFMLKRV*YL 358
L+TGL C++L HW L I RV YL
Sbjct: 653 LDTGLLKCYTLRHWILLVIVPKWSRVTYL 681
>08_01_0978 +
9841441-9842169,9842303-9842590,9842768-9843612,
9843941-9844223,9844303-9844416
Length = 752
Score = 30.7 bits (66), Expect = 0.37
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 272 LETGLNSCFSLEHWFSLTIYFMLKRV*YL 358
++T L C+SL HW L I RV YL
Sbjct: 611 IDTNLLKCYSLRHWILLVITLKWSRVHYL 639
>04_03_0472 - 16316440-16316740,16317046-16317614
Length = 289
Score = 30.3 bits (65), Expect = 0.49
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 272 LETGLNSCFSLEHWFSLTIYFMLKRV*YL 358
L+TGL C++L HW L I +V YL
Sbjct: 180 LDTGLLKCYTLRHWILLVIVPKWSKVTYL 208
>07_01_0917 +
7735696-7735896,7735907-7736404,7736481-7736813,
7736991-7737314,7737367-7737836,7738165-7738447,
7738527-7738640
Length = 740
Score = 29.1 bits (62), Expect = 1.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 272 LETGLNSCFSLEHWFSLTIYFMLKRV*YL 358
++T L C+SL+HW L I V YL
Sbjct: 599 IDTNLLKCYSLQHWILLVITLKWSSVHYL 627
>03_04_0008 -
16274158-16274458,16274791-16275623,16275706-16276167,
16276245-16276882,16277068-16277197
Length = 787
Score = 29.1 bits (62), Expect = 1.1
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 272 LETGLNSCFSLEHWFSLTIYFMLKRV*YL 358
L TGL C++ +HW L I RV YL
Sbjct: 678 LNTGLLKCYTSQHWILLVIVPKWSRVTYL 706
>10_08_0038 - 14336633-14336864,14336970-14337187,14337302-14339020
Length = 722
Score = 28.3 bits (60), Expect = 2.0
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = -1
Query: 147 WAQNSLPWFL*VLLSL--PHTGLYSGVEMQFSA 55
W +N + F VL +L PH LY V+M+F+A
Sbjct: 333 WQENCMEQFKLVLEALHQPHRNLYIAVDMEFTA 365
>10_08_0041 - 14374684-14377339,14377371-14378233
Length = 1172
Score = 27.5 bits (58), Expect = 3.5
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = -1
Query: 147 WAQNSLPWFL*VLLSL--PHTGLYSGVEMQFSA 55
W +N + F VL +L PH LY V+M+F+A
Sbjct: 652 WRENCMEQFKLVLEALHQPHRHLYIAVDMEFAA 684
>09_02_0240 - 6157855-6157891,6158040-6158329
Length = 108
Score = 27.1 bits (57), Expect = 4.6
Identities = 17/62 (27%), Positives = 25/62 (40%)
Frame = +2
Query: 5 TSTPSTGGTSRQTIEKCAENCISTPEYNPVCGSDNKTYKNQGRLFCAQNCGVKVTLARQA 184
+S+ T I C+ NC TP+Y C + Q + +C C +L Q
Sbjct: 42 SSSNGTVTCYNNAINTCSSNCSITPQY---CDQCRRESNQQCQNYCYNGCLYGCSL--QH 96
Query: 185 PC 190
PC
Sbjct: 97 PC 98
>07_03_1769 +
29377784-29377878,29377993-29378180,29378340-29378472,
29378580-29378715,29378996-29379072,29379162-29380830,
29380935-29381018,29381120-29381224,29381302-29381358
Length = 847
Score = 26.6 bits (56), Expect = 6.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 204 FDEDGHGACLAKVTLTPQFWAQNS 133
+D DG GACL + T P F+ +S
Sbjct: 140 YDADGEGACLKRYT-NPSFFTSHS 162
>12_02_0466 +
19403855-19404347,19404359-19404582,19404659-19405093,
19405180-19406024,19406353-19406635,19406903-19406977
Length = 784
Score = 26.2 bits (55), Expect = 8.1
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 272 LETGLNSCFSLEHWFSLTI 328
++T L C+SL HW L I
Sbjct: 656 IDTNLLKCYSLRHWILLVI 674
>08_02_1323 -
26136015-26137876,26138300-26139229,26139922-26140068,
26140139-26140360,26140513-26140555
Length = 1067
Score = 26.2 bits (55), Expect = 8.1
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +2
Query: 2 QTSTPSTGGTSRQTIEKCAENCISTPEYNPVCGSDNK 112
++S+P + + KC E+C+ ++ P G+D+K
Sbjct: 139 RSSSPPHVSEVQVGLSKCTEDCVVIGDHIPPSGNDSK 175
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,621,007
Number of Sequences: 37544
Number of extensions: 182867
Number of successful extensions: 427
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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