Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_O16
         (664 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0836 - 28088832-28089422,28089626-28089831,28089985-28090330     31   0.62 
05_07_0106 + 27723877-27723978,27724825-27725100,27726103-27727281     29   4.4  
11_02_0058 + 7879859-7879951,7880844-7881078,7881165-7881535,788...    28   7.6  
04_04_0624 + 26676765-26676879,26676955-26677093,26678012-266780...    28   7.6  
03_05_0974 + 29324025-29324117,29325064-29325298,29325385-293257...    28   7.6  

>03_05_0836 - 28088832-28089422,28089626-28089831,28089985-28090330
          Length = 380

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -1

Query: 652 KILENGISGNIGLNVDGNTERLVLESWLTNLEVVWVTS 539
           +I  NG +     +  G T+R++L SWL+ LE+ + T+
Sbjct: 220 RIFSNGFTEAPETSNSGQTKRVLLSSWLSTLELAYTTA 257


>05_07_0106 + 27723877-27723978,27724825-27725100,27726103-27727281
          Length = 518

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 114 NRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLS 245
           NR+ R L++  +++    E I +    CMKK+   ++N L  +S
Sbjct: 39  NRLLRSLVNIHEQETYSREIITEAIESCMKKQADNLVNTLDVIS 82


>11_02_0058 +
           7879859-7879951,7880844-7881078,7881165-7881535,
           7881648-7882304
          Length = 451

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 23/85 (27%), Positives = 36/85 (42%)
 Frame = +2

Query: 377 INAFKHYLKPYPQEKLHFVGVXINDVVVEKLVTFFDYSQFDATNSVFLTKKEIKTSYPHN 556
           +N F+  L PYP  ++HF+      V+  +       S  + TNS F     +    P +
Sbjct: 252 VNEFQTNLVPYP--RIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRH 309

Query: 557 FKVRQPRLKHKPFSVTIDVXSDVAT 631
            K     L ++   V  DV + VAT
Sbjct: 310 GKYMACCLMYRGDVVPKDVNAAVAT 334


>04_04_0624 +
           26676765-26676879,26676955-26677093,26678012-26678083,
           26678174-26678317,26678402-26678530,26678819-26678938,
           26679015-26679076,26679937-26680170,26680259-26680485,
           26680551-26680683,26680787-26680944,26681139-26681351,
           26681482-26681730
          Length = 664

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -1

Query: 658 PKKILENGISGNIGLNVDGNTERLVLES-WLTNLEVVWVTSL 536
           P    EN   GN    VDGN ++   +  WL  LEV+   SL
Sbjct: 257 PDNQCENSQKGNESSRVDGNQQKSFQQPLWLLILEVITAISL 298


>03_05_0974 +
           29324025-29324117,29325064-29325298,29325385-29325755,
           29325864-29326520
          Length = 451

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 23/85 (27%), Positives = 36/85 (42%)
 Frame = +2

Query: 377 INAFKHYLKPYPQEKLHFVGVXINDVVVEKLVTFFDYSQFDATNSVFLTKKEIKTSYPHN 556
           +N F+  L PYP  ++HF+      V+  +       S  + TNS F     +    P +
Sbjct: 252 VNEFQTNLVPYP--RIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRH 309

Query: 557 FKVRQPRLKHKPFSVTIDVXSDVAT 631
            K     L ++   V  DV + VAT
Sbjct: 310 GKYMACCLMYRGDVVPKDVNAAVAT 334


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,524,045
Number of Sequences: 37544
Number of extensions: 300419
Number of successful extensions: 775
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)