Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_O12
(627 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 30 0.31
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 28 0.96
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 28 1.3
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 27 2.2
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 27 2.2
SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces pom... 27 2.2
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch... 26 5.1
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 25 6.8
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 25 9.0
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 29.9 bits (64), Expect = 0.31
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Frame = +2
Query: 326 HSDQNWYEVIPLILLGIRNAWKEDIGSSSAELVYGETLKLPSDFF--LASSVAEVTDYSD 499
H + EVIP+I++GIR+ TL PSD L +S + T SD
Sbjct: 341 HRNHEGQEVIPIIIVGIRSLRNSGSDEDDQPSADSPTLMHPSDLISSLVNSQNQTTSVSD 400
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 28.3 bits (60), Expect = 0.96
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +2
Query: 458 FLASSVAEVTDYSDFLSRLRRYMCNLKPTTVIRHGKSNIFVHKDLQ 595
F S+ T S+FLS+L Y + TVI + K+ F K LQ
Sbjct: 1130 FAGISLDLKTQISEFLSQLCSYFTKIVDGTVIENDKTLDFYEKPLQ 1175
>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 27.9 bits (59), Expect = 1.3
Identities = 20/70 (28%), Positives = 31/70 (44%)
Frame = +2
Query: 62 RFTRWPEVIALEDIKAETVAKAFIRDWISRFGCPQKITTDRGRQFESYLFKELSKLTGSR 241
R RW V ++ E V F+R+++ R I T +E + FK+LS L
Sbjct: 250 RQNRWGVVNVDDENHCEFV---FLRNFLMRTHLQDLIETTSYYHYEKFRFKQLSSLKEQS 306
Query: 242 HISTTAYHPA 271
++T PA
Sbjct: 307 SLATRMGSPA 316
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 27.1 bits (57), Expect = 2.2
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Frame = +2
Query: 284 VERFHRQLKAAIMCHSDQNWYEVIPLILLGIRNAWKEDIGSSSAELVYGETLKLPSDFFL 463
++RF LKA ++ + + P++ L + A K + SS+E+ + TL+ + +
Sbjct: 614 MKRFRGLLKAVLLRRTKNTKIDGKPILTLPPKTAVKSETDLSSSEMEFYNTLQSGAQIQM 673
Query: 464 ASSVAE---VTDYSD---FLSRLRRYMCN 532
+ E T Y L RLR+ C+
Sbjct: 674 RKYLQEGTITTHYGSLLVLLLRLRQACCH 702
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 27.1 bits (57), Expect = 2.2
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 147 DIQSLMKAFATVSALISSKAMTSGQRVNRSTAVKQYLKPFEIGS 16
DI L + +T + L+ S+ + ST K YLKP E GS
Sbjct: 761 DILKLPQPISTWNKLLDSECHRNPNMEFLSTFSKNYLKPQEFGS 804
>SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 220
Score = 27.1 bits (57), Expect = 2.2
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 260 YHPAANGLVERFHRQ-LKAAIMCHSDQNWYEVIPLILLGIRNAWKEDIGSSSAELVYGET 436
+ PA L + RQ L ++C + Y++ ++LL + WK +S A ++ T
Sbjct: 110 FTPAQAFLSQPIIRQYLTLLLICLVETTVYQISVVLLLCLTMGWKSWTSASGAVILSSST 169
Query: 437 LKLP 448
LP
Sbjct: 170 RMLP 173
>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
3|||Manual
Length = 923
Score = 25.8 bits (54), Expect = 5.1
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +2
Query: 242 HISTTAYHPAANGLVERFHRQLKAAIMCHSDQNWYEVIPLILLGIRNAWKEDIG 403
H ST ++ L+E R K S+ + YE+ ILL N W++ +G
Sbjct: 15 HSSTLEFYDFVTTLLEPLSRIGKTRKSKTSNLDPYELKRKILLDYFNKWRQHVG 68
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 25.4 bits (53), Expect = 6.8
Identities = 20/77 (25%), Positives = 32/77 (41%)
Frame = +2
Query: 308 KAAIMCHSDQNWYEVIPLILLGIRNAWKEDIGSSSAELVYGETLKLPSDFFLASSVAEVT 487
+A ++ D+N IPL + + + S E L +P D + SVAEV
Sbjct: 22 QAELLSSKDENLQPSIPLSPVAFELDFSGNFQFISDNS--SELLDIPKDKIIGHSVAEVL 79
Query: 488 DYSDFLSRLRRYMCNLK 538
+ + +R C LK
Sbjct: 80 GTDGYNAFMRAVNCLLK 96
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 25.0 bits (52), Expect = 9.0
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 267 QQLTDLWNVSIGN*KQQLCVTPIKTGMKSF 356
+QL + N +IGN + C+ KTG+ +F
Sbjct: 169 KQLQEKRNRTIGNVYEMACLLVFKTGLMNF 198
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,473,313
Number of Sequences: 5004
Number of extensions: 48931
Number of successful extensions: 153
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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