Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_O12
(627 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 83 2e-16
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 83 2e-16
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 83 2e-16
U58760-5|AAK31464.1| 1076|Caenorhabditis elegans Hypothetical pr... 33 0.13
AM419898-1|CAL99238.1| 1121|Caenorhabditis elegans cation transp... 33 0.13
AL132876-34|CAD21662.2| 1121|Caenorhabditis elegans Hypothetical... 33 0.13
Z93392-1|CAB07687.2| 1737|Caenorhabditis elegans Hypothetical pr... 31 0.89
Z83219-9|CAB05699.2| 1737|Caenorhabditis elegans Hypothetical pr... 31 0.89
AL032648-9|CAB54460.1| 1737|Caenorhabditis elegans Hypothetical ... 31 0.89
U58761-1|AAB00712.1| 333|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z77663-4|CAB01213.1| 605|Caenorhabditis elegans Hypothetical pr... 27 8.3
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 83.0 bits (196), Expect = 2e-16
Identities = 47/167 (28%), Positives = 86/167 (51%), Gaps = 7/167 (4%)
Frame = +2
Query: 32 GFKYCLTAVDRFTRWPEVIALEDIKAETVAKAFIRDW-ISRFGCPQKITTDRGRQFESYL 208
G +Y LT +D FT++ + + D KAETV KAF+ W I P K+ TD+G++F + L
Sbjct: 1637 GNRYILTIIDLFTKYGTAVPIPDKKAETVLKAFVERWAIGEGRIPLKLLTDQGKEFVNGL 1696
Query: 209 FKELSKLTGSRHISTTAYHPAANGLVERFHRQLKAAIMCHS--DQNWYEVIPLILLGIRN 382
F + + + HI+T Y+ ANG VERF++ + + + W + + + N
Sbjct: 1697 FAQFTHMLKIEHITTKGYNSRANGAVERFNKTIMHIMKKKTAVPMEWDDQVVYAVYAYNN 1756
Query: 383 AWKEDIGSSSAELVYGE----TLKLPSDFFLASSVAEVTDYSDFLSR 511
E+ G + L++G L++ + + + A++ +Y L++
Sbjct: 1757 CVHENTGETPMFLMHGRDVMGPLEMSGEDAVGINYADMDEYKHLLTQ 1803
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 83.0 bits (196), Expect = 2e-16
Identities = 47/167 (28%), Positives = 86/167 (51%), Gaps = 7/167 (4%)
Frame = +2
Query: 32 GFKYCLTAVDRFTRWPEVIALEDIKAETVAKAFIRDW-ISRFGCPQKITTDRGRQFESYL 208
G +Y LT +D FT++ + + D KAETV KAF+ W I P K+ TD+G++F + L
Sbjct: 1540 GNRYILTIIDLFTKYGTAVPIPDKKAETVLKAFVERWAIGEGRIPLKLLTDQGKEFVNGL 1599
Query: 209 FKELSKLTGSRHISTTAYHPAANGLVERFHRQLKAAIMCHS--DQNWYEVIPLILLGIRN 382
F + + + HI+T Y+ ANG VERF++ + + + W + + + N
Sbjct: 1600 FAQFTHMLKIEHITTKGYNSRANGAVERFNKTIMHIMKKKTAVPMEWDDQVVYAVYAYNN 1659
Query: 383 AWKEDIGSSSAELVYGE----TLKLPSDFFLASSVAEVTDYSDFLSR 511
E+ G + L++G L++ + + + A++ +Y L++
Sbjct: 1660 CVHENTGETPMFLMHGRDVMGPLEMSGEDAVGINYADMDEYKHLLTQ 1706
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 83.0 bits (196), Expect = 2e-16
Identities = 47/167 (28%), Positives = 86/167 (51%), Gaps = 7/167 (4%)
Frame = +2
Query: 32 GFKYCLTAVDRFTRWPEVIALEDIKAETVAKAFIRDW-ISRFGCPQKITTDRGRQFESYL 208
G +Y LT +D FT++ + + D KAETV KAF+ W I P K+ TD+G++F + L
Sbjct: 1551 GNRYILTIIDLFTKYGTAVPIPDKKAETVLKAFVERWAIGEGRIPLKLLTDQGKEFVNGL 1610
Query: 209 FKELSKLTGSRHISTTAYHPAANGLVERFHRQLKAAIMCHS--DQNWYEVIPLILLGIRN 382
F + + + HI+T Y+ ANG VERF++ + + + W + + + N
Sbjct: 1611 FAQFTHMLKIEHITTKGYNSRANGAVERFNKTIMHIMKKKTAVPMEWDDQVVYAVYAYNN 1670
Query: 383 AWKEDIGSSSAELVYGE----TLKLPSDFFLASSVAEVTDYSDFLSR 511
E+ G + L++G L++ + + + A++ +Y L++
Sbjct: 1671 CVHENTGETPMFLMHGRDVMGPLEMSGEDAVGINYADMDEYKHLLTQ 1717
>U58760-5|AAK31464.1| 1076|Caenorhabditis elegans Hypothetical
protein C27A2.1 protein.
Length = 1076
Score = 33.5 bits (73), Expect = 0.13
Identities = 24/95 (25%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Frame = +2
Query: 344 YEVIPLILLGIRNAWKEDIGSSSAELVYGETL--KLPSDFFLASSVAEVTDYSDFLSRLR 517
Y+ L++ G +++W+ + AE +Y E + +LPS+ V++ D + L+
Sbjct: 483 YKEDELLINGKQHSWRINTSVVPAEKIYSEDIDAQLPSELSRLGFKYLVSNCFDAPAPLK 542
Query: 518 RYMCNLKPTTVIRHGKSNIFVHKDLQKSSQVFLRT 622
+++CN+ I G S+ V K + + SQ +T
Sbjct: 543 QFLCNVSGLNRIPFGGSD--VEKKIAEVSQAIEQT 575
>AM419898-1|CAL99238.1| 1121|Caenorhabditis elegans cation
transporting ATPase protein.
Length = 1121
Score = 33.5 bits (73), Expect = 0.13
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Frame = +2
Query: 341 WYEVIPL--ILLGIRNAWKEDIGSSSAELVYGETLKLPSDFFLASSVAEVTDYSDFLSRL 514
WY IP+ IL + WK IG+ + G T F+ A + +S++
Sbjct: 972 WYHNIPISDILFTAEHHWK--IGAKNFTTSQGLTFGEQQQLFIKGQAAAAWQITLVMSQV 1029
Query: 515 -RRYMCNLKPTTVIRHGKSNI 574
Y C + +V RHG +NI
Sbjct: 1030 FHLYNCTTRRVSVFRHGLTNI 1050
>AL132876-34|CAD21662.2| 1121|Caenorhabditis elegans Hypothetical
protein Y105E8A.12a protein.
Length = 1121
Score = 33.5 bits (73), Expect = 0.13
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Frame = +2
Query: 341 WYEVIPL--ILLGIRNAWKEDIGSSSAELVYGETLKLPSDFFLASSVAEVTDYSDFLSRL 514
WY IP+ IL + WK IG+ + G T F+ A + +S++
Sbjct: 972 WYHNIPISDILFTAEHHWK--IGAKNFTTSQGLTFGEQQQLFIKGQAAAAWQITLVMSQV 1029
Query: 515 -RRYMCNLKPTTVIRHGKSNI 574
Y C + +V RHG +NI
Sbjct: 1030 FHLYNCTTRRVSVFRHGLTNI 1050
>Z93392-1|CAB07687.2| 1737|Caenorhabditis elegans Hypothetical protein
Y48E1A.1a protein.
Length = 1737
Score = 30.7 bits (66), Expect = 0.89
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Frame = +2
Query: 158 CPQKITTDRGRQFESYLFKELSKLTGSRHISTTAYHPAANGLVERFHRQLKAAIMCHSDQ 337
C + ITT+ F Y E+SK RH+S TA + G ++ F+R ++ +
Sbjct: 1612 CSKAITTEMNNVFAVYGI-EVSK----RHLSLTADYMTFTGQIQPFNRGAMSSSSSPLQK 1666
Query: 338 NWYEVIPLILL-GIRNAWKEDIGSSSAELVYG 430
+E L + + ++++ S SA LV G
Sbjct: 1667 MTFETTMAFLREALLHGEEDNVNSPSARLVMG 1698
>Z83219-9|CAB05699.2| 1737|Caenorhabditis elegans Hypothetical protein
Y48E1A.1a protein.
Length = 1737
Score = 30.7 bits (66), Expect = 0.89
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Frame = +2
Query: 158 CPQKITTDRGRQFESYLFKELSKLTGSRHISTTAYHPAANGLVERFHRQLKAAIMCHSDQ 337
C + ITT+ F Y E+SK RH+S TA + G ++ F+R ++ +
Sbjct: 1612 CSKAITTEMNNVFAVYGI-EVSK----RHLSLTADYMTFTGQIQPFNRGAMSSSSSPLQK 1666
Query: 338 NWYEVIPLILL-GIRNAWKEDIGSSSAELVYG 430
+E L + + ++++ S SA LV G
Sbjct: 1667 MTFETTMAFLREALLHGEEDNVNSPSARLVMG 1698
>AL032648-9|CAB54460.1| 1737|Caenorhabditis elegans Hypothetical
protein Y48E1A.1a protein.
Length = 1737
Score = 30.7 bits (66), Expect = 0.89
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Frame = +2
Query: 158 CPQKITTDRGRQFESYLFKELSKLTGSRHISTTAYHPAANGLVERFHRQLKAAIMCHSDQ 337
C + ITT+ F Y E+SK RH+S TA + G ++ F+R ++ +
Sbjct: 1612 CSKAITTEMNNVFAVYGI-EVSK----RHLSLTADYMTFTGQIQPFNRGAMSSSSSPLQK 1666
Query: 338 NWYEVIPLILL-GIRNAWKEDIGSSSAELVYG 430
+E L + + ++++ S SA LV G
Sbjct: 1667 MTFETTMAFLREALLHGEEDNVNSPSARLVMG 1698
>U58761-1|AAB00712.1| 333|Caenorhabditis elegans Hypothetical
protein C01F1.4 protein.
Length = 333
Score = 28.3 bits (60), Expect = 4.8
Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -3
Query: 358 WNDFIPVLIGVTHNC-CFQLPMETF 287
WN + PV++ + H+ CF L +E F
Sbjct: 68 WNSYKPVVLNIPHSSYCFPLTLEAF 92
>Z77663-4|CAB01213.1| 605|Caenorhabditis elegans Hypothetical
protein F53F4.4 protein.
Length = 605
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/67 (26%), Positives = 30/67 (44%)
Frame = +2
Query: 119 AKAFIRDWISRFGCPQKITTDRGRQFESYLFKELSKLTGSRHISTTAYHPAANGLVERFH 298
A A + I R+GCP KI R +F S + + S L S ++ T +G +
Sbjct: 112 AYALVMKAIERYGCPSKIEVARVNEFLS-VGVDASTLLISENLENTTAKVTTDGSKPEVN 170
Query: 299 RQLKAAI 319
+K ++
Sbjct: 171 MLVKTSL 177
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,540,815
Number of Sequences: 27780
Number of extensions: 264251
Number of successful extensions: 566
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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