Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_O09
         (314 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0399 - 33632811-33633107,33633236-33633385,33633705-336340...    27   3.1  
11_04_0150 + 14127378-14127612,14127705-14128144                       25   9.4  
08_02_0532 - 18264028-18264048,18264300-18264344,18265462-182655...    25   9.4  
07_01_0154 - 1094256-1094672,1094954-1094977,1095867-1095891,109...    25   9.4  
02_03_0118 - 15451031-15451123,15451744-15451831,15451914-154519...    25   9.4  

>03_06_0399 - 33632811-33633107,33633236-33633385,33633705-33634029,
            33635315-33635982,33636967-33637212,33637405-33637545,
            33637807-33637856,33637943-33638060,33638304-33638910,
            33639339-33639463,33639813-33639869,33639952-33640023,
            33640100-33640232,33640305-33640428,33640522-33640576,
            33640672-33641322
          Length = 1272

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 193  SPFSIIHASRTFLVSGQAQHGFNFGFSVLTNAGDSV 86
            S F I+   RT L S   QH FNF + + +  G  +
Sbjct: 1134 SGFIIVRDGRTVLRSPVQQHDFNFTYQLESGGGSDL 1169


>11_04_0150 + 14127378-14127612,14127705-14128144
          Length = 224

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 135 CCACPETKKVRDACIIENGEENCGPLIEEHKACMR 239
           C  C    +  DA +  NG+++   L+EE+ A  R
Sbjct: 94  CLRCQLPTEDLDALVSVNGDDDLANLLEEYDAASR 128


>08_02_0532 -
           18264028-18264048,18264300-18264344,18265462-18265585,
           18265730-18265788,18266417-18266584
          Length = 138

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +3

Query: 81  KITESPALVNTEKPKLKPCCACPETKKVRDACIIENGEE 197
           ++ E  +++  EK + +  CACP   ++R+     +GE+
Sbjct: 41  ELVELESIIGREKKEERQHCACPALARMRNPHPQPSGEQ 79


>07_01_0154 -
           1094256-1094672,1094954-1094977,1095867-1095891,
           1096014-1096304,1096391-1096470,1096953-1097052,
           1097143-1097204,1097650-1097750,1097940-1098117,
           1098298-1098924,1099014-1099100,1099804-1099905,
           1100265-1100348,1100580-1100657
          Length = 751

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 238 LMQALCSSINGPQFSSPFSIIHASRTFL 155
           L+Q  C  ING   +S F ++H    FL
Sbjct: 184 LLQLRCLDINGHMVASLFRVLHTILKFL 211


>02_03_0118 -
           15451031-15451123,15451744-15451831,15451914-15451985,
           15452896-15453018,15453541-15453629
          Length = 154

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -1

Query: 284 LKISNLKRLDVKTHLPHASFVFFYQWTTIFFSI 186
           LKI N  +L  K H  +   +  Y W+ +F+ +
Sbjct: 78  LKIQNYVKLTYKLHYSYIEKLSMYTWSHLFWCL 110


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,679,885
Number of Sequences: 37544
Number of extensions: 138129
Number of successful extensions: 335
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)