Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_O09
         (314 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   3.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   3.5  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    20   8.1  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 203 TIFFSILNYTCIAHFFSFR 147
           TI +S  N+TCI   F+ R
Sbjct: 192 TIEYSTGNFTCIQIVFNLR 210


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -2

Query: 226 LCSSINGPQFSSPFSIIHASRTFLVSGQAQ 137
           L  S+NG Q   P   +H  ++     QAQ
Sbjct: 798 LSKSVNGDQSQPPHQQLHHHQSTHPQAQAQ 827


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 9/37 (24%), Positives = 16/37 (43%)
 Frame = -1

Query: 206 TTIFFSILNYTCIAHFFSFRTGATRLQFWFFSINQCR 96
           T + FS  + +C+         AT    W +  ++CR
Sbjct: 148 TCLVFSSGSVSCVPSVKHVAKCATDFSSWPYDTHRCR 184


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,322
Number of Sequences: 438
Number of extensions: 1858
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6719922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)