Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_O08
         (566 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132865-13|CAB60609.1|  496|Caenorhabditis elegans Hypothetical...    29   3.1  
Z54236-7|CAA90982.1| 1471|Caenorhabditis elegans Hypothetical pr...    28   4.1  
U53155-4|AAC48265.1|  619|Caenorhabditis elegans Hypothetical pr...    28   4.1  
AF047657-7|AAK18943.1|  424|Caenorhabditis elegans Hypothetical ...    28   5.4  
U64608-3|AAB04593.2|  349|Caenorhabditis elegans Serpentine rece...    27   9.4  

>AL132865-13|CAB60609.1|  496|Caenorhabditis elegans Hypothetical
           protein Y62E10A.16 protein.
          Length = 496

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 129 RLLLFSTCSTMLKTLKPSTRVPLSLV 206
           R+  F TCS  +KT+K    +PLS+V
Sbjct: 290 RIEQFLTCSETIKTVKSDALIPLSIV 315


>Z54236-7|CAA90982.1| 1471|Caenorhabditis elegans Hypothetical
           protein C27B7.7 protein.
          Length = 1471

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/56 (23%), Positives = 29/56 (51%)
 Frame = +3

Query: 168 TLKPSTRVPLSLVCT*MRDSSCTHIILQLSSAMILMDSFYQLLMKFIHNSSLIWTL 335
           T  P T  PLS+ CT ++  S   ++ +++   + +DS +  ++  +H   +  T+
Sbjct: 256 TADPQTNEPLSITCT-VKSVSKASVLWKVNGIKVSVDSSFYTVVTSVHEDFIESTI 310


>U53155-4|AAC48265.1|  619|Caenorhabditis elegans Hypothetical
           protein ZC513.3 protein.
          Length = 619

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -1

Query: 104 WRTHSTWEDN-RFCTISRILQQLSYWCSYRC 15
           WRT +  E + +F  +SRIL+Q + W S  C
Sbjct: 542 WRTFAIREKSEKFPNVSRILRQKTSWVSKNC 572


>AF047657-7|AAK18943.1|  424|Caenorhabditis elegans Hypothetical
           protein F37B4.7 protein.
          Length = 424

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +2

Query: 104 IFYQKLREEAIALFHLFYYAKDFETFYKSA-AFARVHLNEGQFLYAYYIA 250
           +FY       IA F  + Y K  +T YKSA AF R  L  G+FL AY +A
Sbjct: 101 VFYGWATATEIAYF-AYIYVKVPKTEYKSATAFTRAALLVGRFL-AYALA 148


>U64608-3|AAB04593.2|  349|Caenorhabditis elegans Serpentine
           receptor, class v protein7 protein.
          Length = 349

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = -2

Query: 202 SESGTLVEGFKVF-SIVEQVEKSNSLFP*LLVEDGELIVLGKITDSVQFQEFFNSFLIGV 26
           + + TL E F    S+V  V    S F  +L+   E+++L  + ++V    F+  F IG+
Sbjct: 2   ASNATLPEWFDPLESVVSTVFMLGS-FVTILLYFVEILILVTLRNTVYKGMFYQIFTIGI 60

Query: 25  VIDV 14
           +IDV
Sbjct: 61  IIDV 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,552,573
Number of Sequences: 27780
Number of extensions: 260017
Number of successful extensions: 717
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)