Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_O03
         (327 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote...    29   0.24 
SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.24 
SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase |S...    25   3.8  
SPAC18G6.07c |mra1||ribosome biogenesis protein Mra1|Schizosacch...    25   3.8  
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    25   3.8  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    24   6.7  
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    23   8.8  

>SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 28.7 bits (61), Expect = 0.24
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -2

Query: 215 LLRVDSYFRLTSWCHLGTDTIEAFQRVTTNSGRSFANFLTVSFTGCILTQEC 60
           +L   SYF + S   LGT        + T  G  F+  L V F GC++   C
Sbjct: 1   MLLTQSYFCIMSM--LGTLARLGLTALNTYPGAPFSGLLWVQFVGCVIMGFC 50


>SPAC977.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 311

 Score = 28.7 bits (61), Expect = 0.24
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -2

Query: 215 LLRVDSYFRLTSWCHLGTDTIEAFQRVTTNSGRSFANFLTVSFTGCILTQEC 60
           +L   SYF + S   LGT        + T  G  F+  L V F GC++   C
Sbjct: 1   MLLTQSYFCIMSM--LGTLARLGLTALNTYPGAPFSGLLWVQFVGCVIMGFC 50


>SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
 Frame = -1

Query: 195 FPFNVLVSPWYRHH*GISAGHDKQRQEFRQFP----YCKFYRLHSH 70
           +PF ++   W  +  G   G D+Q++  R  P    +C ++ +  H
Sbjct: 58  WPFLIVYLIWLIYDDGFVTGKDRQKRWLRNAPPYRWFCHYFPIRLH 103


>SPAC18G6.07c |mra1||ribosome biogenesis protein
           Mra1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 161 LYQGDTKTLNGNMNLLLTIKNDIND 235
           L++   +++NGN  LL  IKN + D
Sbjct: 252 LHKLSIRSVNGNEKLLKVIKNPVTD 276


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +3

Query: 87  KTYSKEIGETPAAV-CRDPLKCLNGVCTK 170
           K + KE+G +P+AV CR      NG+C K
Sbjct: 194 KRFLKEVGNSPSAVYCR--YYNANGICGK 220


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -1

Query: 144 SAGHDKQRQE-FRQFPYCKFYRLHSHSGV 61
           ++ H+ Q  E   +FPY  F  L+ HS +
Sbjct: 4   NSSHENQSSENIIEFPYVDFEELNVHSNI 32


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 274 NLTFRMLKCNLMFV 233
           N TFR  KC++MFV
Sbjct: 136 NATFRCDKCDMMFV 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,117,907
Number of Sequences: 5004
Number of extensions: 19767
Number of successful extensions: 45
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)