Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_O03
         (327 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0061 + 10196105-10196156,10198110-10198406,10198753-101998...    26   8.0  
01_06_1602 - 38559661-38559936,38560008-38560137,38562550-385627...    26   8.0  

>10_06_0061 +
           10196105-10196156,10198110-10198406,10198753-10199813,
           10199900-10200250
          Length = 586

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = -2

Query: 212 LRVDSYFRLTSWCHLGTDTIEAFQRVTTNSGRSFANFLTVSFTGC 78
           ++ ++++ L++W  +   T      V T  G+  A   TV+ +GC
Sbjct: 107 IQPNTHYSLSAWLQVSAGTANVMAVVRTPDGQFVAAGATVAKSGC 151


>01_06_1602 -
           38559661-38559936,38560008-38560137,38562550-38562778,
           38563627-38563659,38563746-38563896
          Length = 272

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = +3

Query: 72  ENAACKTYSKEIGETPAAVCRDPL-KCLNGVCTKVTPRR 185
           +N  C T     G+    +C D   K  +G C K+TP R
Sbjct: 215 DNTLCGTCGTNDGKDEFWICCDNCEKWYHGKCVKITPAR 253


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,920,767
Number of Sequences: 37544
Number of extensions: 121841
Number of successful extensions: 312
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)