Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_N23
         (481 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1060 + 10958632-10958871,10959006-10959272                       28   4.5  
03_05_0335 + 23259950-23259952,23260157-23260546,23263504-23263770     27   6.0  

>12_01_1060 + 10958632-10958871,10959006-10959272
          Length = 168

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 88  SITSEARRLVNYCTLTKATDNNGRPPDHV 2
           S+  EARR++    + K  DNN   PD V
Sbjct: 67  SVLREARRIIQESEIMKEDDNNWPEPDRV 95


>03_05_0335 + 23259950-23259952,23260157-23260546,23263504-23263770
          Length = 219

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 302 SRLSCT*YTCRTLASFQIPWNFLHSVTARLRSV 400
           + L C  + C  L  F +P NF  ++ A  RSV
Sbjct: 2   ANLGCFRFYCENLGCFNLPENFKENLEAFFRSV 34


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,649,805
Number of Sequences: 37544
Number of extensions: 210636
Number of successful extensions: 377
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)