Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_N23
         (481 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75554-11|CAA99961.1|  301|Caenorhabditis elegans Hypothetical p...    29   2.3  
Z66512-9|CAA91328.3|  253|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z48638-12|CAA88573.3|  253|Caenorhabditis elegans Hypothetical p...    27   7.0  

>Z75554-11|CAA99961.1|  301|Caenorhabditis elegans Hypothetical
           protein ZC455.8a protein.
          Length = 301

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
 Frame = -2

Query: 282 LVMQVYY-TYHSRRVGEYSLFLVKSLFVASLVYAN*GKT-FNLKCFCYI-FISAIMLPLQ 112
           L + +YY +     +  + LF  KSLF+A+L+ +N   T F L     I  + A+ LP++
Sbjct: 60  LTVSIYYFSLIVSYISPFILFQYKSLFIATLLSSNVVSTRFFLGALISIERLIAVFLPVK 119

Query: 111 YYSN 100
           +++N
Sbjct: 120 FHNN 123


>Z66512-9|CAA91328.3|  253|Caenorhabditis elegans Hypothetical
           protein ZK892.5 protein.
          Length = 253

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +3

Query: 78  DVIEARKHYCNTVAATLLL 134
           ++IE R+HY N V+AT +L
Sbjct: 16  ELIERRRHYLNVVSATAIL 34


>Z48638-12|CAA88573.3|  253|Caenorhabditis elegans Hypothetical
           protein ZK892.5 protein.
          Length = 253

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +3

Query: 78  DVIEARKHYCNTVAATLLL 134
           ++IE R+HY N V+AT +L
Sbjct: 16  ELIERRRHYLNVVSATAIL 34


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,183,130
Number of Sequences: 27780
Number of extensions: 194573
Number of successful extensions: 341
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)