Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_N21
         (328 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0107 - 12613491-12613538,12613906-12614139,12614682-126147...    27   2.6  
08_02_0725 - 20442988-20443180,20443268-20443540,20443642-204438...    27   4.6  
06_01_0247 + 1863549-1863978,1865001-1865261,1865346-1866221,186...    27   4.6  
04_04_1158 - 31342934-31343272,31343508-31343658,31343745-313439...    26   8.0  

>01_03_0107 -
           12613491-12613538,12613906-12614139,12614682-12614713,
           12616021-12616176,12617972-12618159,12618242-12618324,
           12618821-12618976,12620320-12621162,12621197-12621550,
           12621962-12623125
          Length = 1085

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 35  RRSLSEDDKYSYFTEDVDLNTYMYYLHMN 121
           + SL  + KY   +E  DL  + YY H+N
Sbjct: 652 KNSLINNTKYIVLSESGDLQVWRYYKHVN 680


>08_02_0725 -
           20442988-20443180,20443268-20443540,20443642-20443853,
           20443935-20444247,20444334-20444441,20444537-20444643,
           20444743-20444781
          Length = 414

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 15/63 (23%), Positives = 27/63 (42%)
 Frame = +2

Query: 95  TYMYYLHMNYPYWMTDEVYGLNKERQGEILMYANSQLLARLRMERLSHKMCDIXMFMWNE 274
           TY Y+L+ +  YW  D   G   ++Q     + +  L     M + S++ C       + 
Sbjct: 320 TYKYHLNSDMFYWSIDAAAGGGDKQQQRAPAWCDRILWRGKGMRQASYERCGGYRISDHR 379

Query: 275 PVK 283
           PV+
Sbjct: 380 PVR 382


>06_01_0247 +
           1863549-1863978,1865001-1865261,1865346-1866221,
           1866344-1866813
          Length = 678

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 170 DALCSNRTLRQSSNTDNSYEGNTC 99
           D     R + QS+NTDN  EG+ C
Sbjct: 276 DGTVKTRQVPQSANTDNHCEGSGC 299


>04_04_1158 -
           31342934-31343272,31343508-31343658,31343745-31343976,
           31344173-31344284,31344572-31344690,31344772-31344936,
           31345049-31345247,31345351-31345733,31345838-31345902,
           31346003-31346047,31346402-31346467,31346707-31346778,
           31346907-31346981,31347086-31347157,31347255-31347326,
           31347954-31348022,31348109-31348180,31348280-31348351,
           31348756-31348827,31349295-31349366,31349528-31349711,
           31350082-31350220
          Length = 948

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 29  GVRRSLSEDDKYSYFTEDVDLNTYMYYL 112
           G  RS+S  D Y Y  + V L    YY+
Sbjct: 391 GSNRSISGSDNYVYQADGVSLGAAQYYV 418


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,661,692
Number of Sequences: 37544
Number of extensions: 121041
Number of successful extensions: 257
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)