Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_N17
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ...    26   4.7  
SPAC6G9.13c |bqt1|mug23, rec26|bouquet formation protein Bqt1|Sc...    25   6.2  
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    25   8.2  
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom...    25   8.2  

>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -2

Query: 445 SRFIEHSAIDYVHDSSETI*ISQIMTYKLDCSILYI 338
           SR    + ID+++DS   + IS  M Y  + +ILY+
Sbjct: 400 SRASRETIIDHLYDSLRLLAISVTMKYVRNQTILYV 435


>SPAC6G9.13c |bqt1|mug23, rec26|bouquet formation protein
           Bqt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -2

Query: 496 QILLYFQ-PNMSEINCMVSRFIEHSAI 419
           QI +Y Q P  ++ NC  +RF++HS I
Sbjct: 21  QIAIYTQTPVCTDSNCEHARFLKHSLI 47


>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = +3

Query: 273 RYMFLTNSSESTICRFFIYFIIMYSIEQSN 362
           +Y+FL     + +C   I+ ++  S+E +N
Sbjct: 220 QYLFLIEGGVTFLCAIVIFLVLPVSVETAN 249


>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 9/34 (26%), Positives = 22/34 (64%)
 Frame = -1

Query: 551 FTLYIIKLSFERL*KSRIANTFIFSAEYVRNKLY 450
           F ++I++ + + +  S I++ ++FS   +R +LY
Sbjct: 403 FMMFIVQQAIDPIDASDISDHYLFSRRTIRKQLY 436


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,276,249
Number of Sequences: 5004
Number of extensions: 44041
Number of successful extensions: 98
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)