Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_N13
(558 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 29 0.46
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa... 27 1.9
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 27 2.5
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|... 26 3.3
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c... 26 4.3
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 26 4.3
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 25 5.7
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ... 25 5.7
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 25 7.5
SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo... 25 7.5
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 25 7.5
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p... 25 7.5
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 25 7.5
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 10.0
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ... 25 10.0
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 25 10.0
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 25 10.0
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ... 25 10.0
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 29.1 bits (62), Expect = 0.46
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +2
Query: 449 RMLMGNFTTDKVDRRMAQSIDFMVDRLESLNQSE 550
++ + NF T V++R+A + +F+ D+ + LN+ E
Sbjct: 172 QLKLNNFFTKGVEKRIAPNENFVADKTDELNEFE 205
>SPCC576.15c |ksg1||serine/threonine protein kinase
Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 592
Score = 27.1 bits (57), Expect = 1.9
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -3
Query: 142 MTAAVPDTGGKHMSGQLTD-LGPLSNIFQAFEPSESTT-MFRRGTLL 8
++ +VP+ KH +G LT LG S + + + S F RGTLL
Sbjct: 392 LSLSVPNASNKHENGDLTSPLGVPSMVSASTNAAPSPVGTFNRGTLL 438
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 26.6 bits (56), Expect = 2.5
Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +2
Query: 290 SLGSFIGQKFAEITRNCPRVASLVLCNTFTDTSVFEY---DDSAALFWLLPSLVLMRMLM 460
+LGSF+ Q + I N +++L + + +F Y ++ ++ W L + R++
Sbjct: 590 TLGSFVKQLPSRILINSTACVNVILDRIWCELCMFSYFREEELLSVIWTLQEKLQTRIIE 649
Query: 461 GNFTT 475
F+T
Sbjct: 650 SYFST 654
>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 997
Score = 26.2 bits (55), Expect = 3.3
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = -3
Query: 175 SSGS*SQNLLEMTAAVP--DTGGKHMSGQLTDLGPLSNIFQAFEPSESTTMFRRGTLL 8
S GS +L+++ A ++GG + S L PL + +A E+ T RGTLL
Sbjct: 227 SGGSSGSPVLDISGAAVALNSGGSNSSASSFYL-PLDRVVRALRCIENNTPITRGTLL 283
>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 865
Score = 25.8 bits (54), Expect = 4.3
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 240 KDLLTILNLIKCTFLVPL*VVS*GKSL 320
+D+ IL I CT L+P+ +V+ K+L
Sbjct: 105 RDVFLILAAICCTILIPINIVATNKTL 131
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.8 bits (54), Expect = 4.3
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = -2
Query: 179 VLLWKLVPKLVGNDSSCARHRWQTYERTTHRLRAAIKYLPSLRTVR 42
V++W +P+ + ND W+ T A K L SL T R
Sbjct: 253 VVVWVAMPQSMQNDLEKECEVWRANNTTVEDREVAEKLLSSLETER 298
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 25.4 bits (53), Expect = 5.7
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +3
Query: 12 SVPLRNIVVDSDGSKAWKIFDSGPKSVSCPLICLPPVSGTAAVISNK 152
SVPL + V S+ K K ++ P + C+PPV+ ++++ +K
Sbjct: 632 SVPLTPVSVCSNSLK--KDGEAAPPKLFVQTNCIPPVTQASSLVPSK 676
>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 5.7
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -3
Query: 280 NVHFIKFKIVNKSFKAVTPFFHVPIWWGLRGNYTY 176
NVHF+ KI + K H I W L G T+
Sbjct: 602 NVHFLLGKIFKQMRKKNLALKHFTIAWNLDGKATH 636
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 25.0 bits (52), Expect = 7.5
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 72 DSGPKSVSCPLICLPPVSGTAAVISNKFW 158
+ P++ PL+CLP G VIS K W
Sbjct: 503 NQNPRATFVPLLCLPEHGG--MVISMKDW 529
>SPAC22F3.12c |rgs1||regulator of G-protein signaling
Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 25.0 bits (52), Expect = 7.5
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +2
Query: 248 IDYLELDKVHIFGASLGSFIGQKFAEITRNCPRVASLVLCNTFTDTSVFE 397
++ L+L +V+ + GS + + + T P+ A+ LCNTF + + +
Sbjct: 88 LENLQLSQVNRIKSRCGSKVLKSTTKFT--IPKTAAKCLCNTFLNARLLQ 135
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 25.0 bits (52), Expect = 7.5
Identities = 10/29 (34%), Positives = 12/29 (41%)
Frame = -2
Query: 170 WKLVPKLVGNDSSCARHRWQTYERTTHRL 84
W P L DS HR +E H+L
Sbjct: 627 WVSFPTLASEDSGFIAHRKNQFEENLHKL 655
>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 25.0 bits (52), Expect = 7.5
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -1
Query: 219 FMFQYGGGSAAITRTPLEASPKTCWK*QQLCQTQV 115
F+F + + TP+E + K+ W QQ+ +T V
Sbjct: 196 FLFNFSSNANNTVVTPVETAIKSEWYQQQINRTDV 230
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 25.0 bits (52), Expect = 7.5
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -3
Query: 346 SRTVSCNFRKLLPYETT*RGTKNVHFIKFKIVNKSFKAVTPFFHVPI 206
S +S +F L + + + TKN F +K KSF+ + P+ V I
Sbjct: 633 SSFLSNDFPLSLLTQASMKATKNAVFSLYKRSPKSFRILEPYMDVTI 679
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 24.6 bits (51), Expect = 10.0
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +2
Query: 191 AEPPPYWNMKEWCDGFKRLIDYLE 262
+EPPP K WC G L D E
Sbjct: 968 SEPPPLLVYK-WCQGINNLTDVWE 990
>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 805
Score = 24.6 bits (51), Expect = 10.0
Identities = 7/20 (35%), Positives = 15/20 (75%)
Frame = +2
Query: 194 EPPPYWNMKEWCDGFKRLID 253
+PP Y+ + ++ +GF+ +ID
Sbjct: 364 QPPTYFRVNKFTEGFQSIID 383
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 24.6 bits (51), Expect = 10.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 432 GRSQNKAAESSYSNTDVSVN 373
G QNK+ SSYS+ SVN
Sbjct: 184 GNMQNKSGVSSYSSKSQSVN 203
>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 690
Score = 24.6 bits (51), Expect = 10.0
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 359 VLCNTFTDTSVFEYDDSAALFWLLPSLVLMRMLMGNFTTD 478
VLC + ++++ Y S AL W ++M+ L G + D
Sbjct: 343 VLCERYATSTLYGYTPSWALSWSYRKDLIMQEL-GGYNAD 381
>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 24.6 bits (51), Expect = 10.0
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +3
Query: 459 WETSQRIKLTEEWLNQLTLWST 524
WE RI ++E Q T+W T
Sbjct: 566 WEKRARISRSKEEARQFTIWKT 587
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,419,110
Number of Sequences: 5004
Number of extensions: 49657
Number of successful extensions: 124
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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