Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_N13
         (558 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0254 - 26706830-26706943,26707063-26707193,26707330-267074...    33   0.15 
10_02_0036 + 4434003-4434092,4436135-4436233,4437794-4437871,443...    33   0.20 
07_03_1218 + 24955627-24955631,24955883-24955937,24956015-249561...    31   0.62 
06_03_0587 + 22555414-22557231                                         30   1.1  
08_02_1536 + 27684789-27685517                                         29   3.3  
09_06_0264 - 21929086-21931368                                         28   5.8  
01_06_0554 + 30179641-30179658,30179725-30180126,30180580-301808...    28   5.8  
04_03_0734 + 19134129-19134464,19135864-19136789,19137148-191376...    27   7.7  

>05_06_0254 -
           26706830-26706943,26707063-26707193,26707330-26707417,
           26707970-26708087,26708184-26708332,26708787-26708840,
           26708963-26709031,26709146-26709246,26709391-26709473,
           26709846-26710041,26710171-26710279
          Length = 403

 Score = 33.1 bits (72), Expect = 0.15
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = +2

Query: 245 LIDYLELDKVHIFGASLGSFIGQKFAEITRNCPRVASLVLCN 370
           L+D+L   K H+FG S+G+ I  K A +  +  R+ SL L N
Sbjct: 113 LMDHLGWKKAHVFGHSMGAMISCKLAAMAPH--RICSLALLN 152


>10_02_0036 +
           4434003-4434092,4436135-4436233,4437794-4437871,
           4438090-4438197,4438534-4438674,4438749-4438997,
           4439477-4439521
          Length = 269

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +2

Query: 140 HFQQVLGLAS-RGVRVIAAEPPPYWNMKEWCDGFKRLIDYLEL 265
           +F+ V+ L    G RV++ + P  WN +EW   F++ +D + +
Sbjct: 19  YFKSVVPLHKISGYRVMSIDVPQVWNHQEWIHSFEKFLDSMNI 61


>07_03_1218 +
           24955627-24955631,24955883-24955937,24956015-24956131,
           24957142-24957306,24957703-24957958,24957987-24958051
          Length = 220

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 15/41 (36%), Positives = 26/41 (63%)
 Frame = +2

Query: 257 LELDKVHIFGASLGSFIGQKFAEITRNCPRVASLVLCNTFT 379
           ++  ++ +FG SLG  +G   A+   N  +V++L+L NTFT
Sbjct: 32  IDTSRIVVFGRSLGGAVGAVLAK--NNPGKVSALILENTFT 70


>06_03_0587 + 22555414-22557231
          Length = 605

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -2

Query: 161 VPKLVGNDSSCARHRWQTYERTTHRLRAAIKYLPSLRTVRIDHNVSQGN 15
           +P  +GN SS   H W      +  +   I  L SL T+ +D N   GN
Sbjct: 457 LPSCIGNLSSSLEHLWLRNNMISGLIPPGIGNLKSLNTLYMDDNYLTGN 505


>08_02_1536 + 27684789-27685517
          Length = 242

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
 Frame = +2

Query: 203 PYWNMKEWCDGFKRLID-YLELDKVHIFGASLGSFI-GQKFAEITRNCPRVASLV-LCNT 373
           P   M+  C+GF+RL D Y  +D++    +S  S    Q+  E+ +   R  +L+ LCN 
Sbjct: 35  PSATMETMCNGFRRLTDVYSCMDEIMCLPSSQASLCKHQQRREVEKELERSLTLLDLCNA 94

Query: 374 FTDT 385
             ++
Sbjct: 95  MQES 98


>09_06_0264 - 21929086-21931368
          Length = 760

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = +2

Query: 404 DSAALFWLLPSLVLMRMLMGNFTTDKVDRRMAQSIDFMVDRLESL 538
           D   + W + + + MR +M   T D++DR+  +  + + D +  L
Sbjct: 494 DRGVILWHIATDLCMRRMMAENTIDEIDRKFLECTEAISDYMAHL 538


>01_06_0554 +
           30179641-30179658,30179725-30180126,30180580-30180892,
           30180966-30181358,30181442-30182427
          Length = 703

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = -1

Query: 468 KFPISILIRTNEGRSQNKAAESSYSNTDVSVNVLQRTSDATRGQFLVISANF 313
           K P  I   T  GR  ++  E++ S T     VLQRT   T+G  L+   +F
Sbjct: 109 KLPCDIFCCTKRGRDGDRLTEAANSLTPSHSQVLQRT---TQGHELISPQSF 157


>04_03_0734 +
           19134129-19134464,19135864-19136789,19137148-19137615,
           19138096-19138159,19138885-19139022
          Length = 643

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +1

Query: 406 FRCFILASTFISPYENADGKLHN 474
           F CF +A+   SPY+N++ KLH+
Sbjct: 623 FNCFAVAA--FSPYQNSETKLHS 643


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,573,950
Number of Sequences: 37544
Number of extensions: 320350
Number of successful extensions: 889
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)