Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_N12
(182 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20 |Schizosacc... 31 0.027
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc... 25 1.00
SPBC543.08 |||phosphoinositide biosynthesis protein |Schizosacch... 25 1.00
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 25 1.7
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 23 4.0
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po... 23 5.3
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 23 5.3
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 23 5.3
SPBC365.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 23 7.0
SPCC663.02 |wtf14||wtf element Wtf14|Schizosaccharomyces pombe|c... 23 7.0
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc... 22 9.3
>SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 290
Score = 30.7 bits (66), Expect = 0.027
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 16 STKPEPERTRRKIYLRSSSLNIVNFNKRNIELRPRAEFGTRLDL 147
STK P+R +R++ L+ SS N FN+ ++ R + L+L
Sbjct: 42 STKKSPKRLKRQVDLQKSSFNDKTFNESDVISNERFKSNDLLEL 85
>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1141
Score = 25.4 bits (53), Expect = 1.00
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 64 SSSLNIVNFNKRNIELRPRAE 126
SSS + N N+R+I + PRAE
Sbjct: 728 SSSRELSNLNERSITIDPRAE 748
>SPBC543.08 |||phosphoinositide biosynthesis protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 250
Score = 25.4 bits (53), Expect = 1.00
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 99 SFIKINNIQR*TSQVYFSSCSLWFWL 22
SFI N I+ +++V F LW+W+
Sbjct: 178 SFILNNGIKATSTKVLFGLLGLWWWM 203
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 24.6 bits (51), Expect = 1.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 3 AAETVDKARTRANTKKNILEKFIVEY 80
AAE++ K + T KN+L F+V+Y
Sbjct: 17 AAESISKDELYSWTLKNVLILFLVQY 42
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 23.4 bits (48), Expect = 4.0
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -1
Query: 104 IFRLLKLTIFNDELLKYIF 48
+F+L + + FNDE Y+F
Sbjct: 729 VFQLERSSAFNDEQFNYVF 747
>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 594
Score = 23.0 bits (47), Expect = 5.3
Identities = 7/12 (58%), Positives = 12/12 (100%)
Frame = +1
Query: 73 LNIVNFNKRNIE 108
LNI+NFN++N++
Sbjct: 425 LNIINFNEKNLK 436
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 23.0 bits (47), Expect = 5.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -1
Query: 122 ARGLNSIFRLLKLTIFNDELLKYIFLRVRSGSGFVDSF 9
A+ LNS F+LL+ +D VRS G ++++
Sbjct: 379 AKRLNSCFQLLERYNLSDPTSDTSMTNVRSWEGLMEAY 416
>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1205
Score = 23.0 bits (47), Expect = 5.3
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 16 STKPEPERTRRKIYLRSSSLNIVNFNKRNIELRPRAEF-GTRLD 144
S+K + + +RR+ + LN N N RN+ R + F G R++
Sbjct: 1133 SSKSDKKSSRRRKNEKRRKLNEQNPNIRNVPERSSSRFQGIRIN 1176
>SPBC365.16 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 277
Score = 22.6 bits (46), Expect = 7.0
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 1 AQPKLSTKPEPERTRRKI 54
+QP LS KP P T ++I
Sbjct: 5 SQPPLSPKPVPSNTWKRI 22
>SPCC663.02 |wtf14||wtf element Wtf14|Schizosaccharomyces pombe|chr
3|||Manual
Length = 222
Score = 22.6 bits (46), Expect = 7.0
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -1
Query: 119 RGLNSIFRLLKLTIFN 72
RG+N ++ +LKLT N
Sbjct: 146 RGVNMLYAILKLTFVN 161
>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
Pms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 794
Score = 22.2 bits (45), Expect = 9.3
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 19 TKPEPERTRRKIYLRSSSLN 78
+KP PER ++ RSS LN
Sbjct: 416 SKPLPERLQKDSMRRSSPLN 435
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 653,676
Number of Sequences: 5004
Number of extensions: 9128
Number of successful extensions: 27
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 41
effective length of database: 2,157,314
effective search space used: 40988966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -