Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_N12
         (182 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0258 + 21750922-21752272,21752971-21753377                       30   0.30 
01_03_0303 + 14792842-14792949,14793659-14793760,14794657-147948...    27   2.1  
04_04_0461 + 25390552-25391904                                         26   4.9  
05_04_0311 - 20120172-20122115                                         25   6.5  

>11_06_0258 + 21750922-21752272,21752971-21753377
          Length = 585

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
 Frame = +1

Query: 13  LSTKPEPERTRRKIYLRSSSLNIVNF----NKRNIELRPRAEFGTRLDL 147
           L TK  P  +   +Y+   SL  +N+    NKR+I+ R R E+ T L L
Sbjct: 416 LPTKDFPGLSPNCVYITDDSLEYINYSRRNNKRDIDNRRRWEYNTLLGL 464


>01_03_0303 + 14792842-14792949,14793659-14793760,14794657-14794800,
            14794906-14794986,14795078-14795147,14795267-14795337,
            14795427-14795594,14796030-14796074,14796449-14796511,
            14796594-14796869,14797858-14797971,14798099-14798225,
            14798315-14798484,14798743-14798841,14799577-14799630,
            14801487-14801522,14801741-14801844,14801952-14802186,
            14802377-14802609,14802846-14803346,14803422-14803716,
            14805796-14805881,14806952-14807064,14807303-14807385,
            14808014-14808866,14809215-14809364,14809963-14811146
          Length = 1854

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +1

Query: 1    AQPKLSTKPEPERTRRKIYLRSSSLNIVNFNKRNIELRPRAEFGTRLDL 147
            A+P    K  P++T  +  LR   L ++N  K++I+LR   +   R+D+
Sbjct: 1084 AKPATKQKVAPKKTDVRAILRP--LTVINCQKKDIQLRFSTDNMKRVDM 1130


>04_04_0461 + 25390552-25391904
          Length = 450

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/46 (28%), Positives = 17/46 (36%)
 Frame = -3

Query: 144 VEPRAEFGTRS*FYISFIKINNIQR*TSQVYFSSCSLWFWLCRQFR 7
           V P    G R    +  + +  I    S VYF     W W C + R
Sbjct: 165 VRPGGGRGVREYLPVGLLPLPGIFAAASAVYFVFLGAWAWACARHR 210


>05_04_0311 - 20120172-20122115
          Length = 647

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 7   PKLSTKPEPERTRRKIYLRSSSLNI 81
           P+L +K + ER R  + LRSSSL++
Sbjct: 537 PQLKSKCKLERLRTLLVLRSSSLSL 561


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,132,329
Number of Sequences: 37544
Number of extensions: 55615
Number of successful extensions: 128
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 14,793,348
effective HSP length: 40
effective length of database: 13,291,588
effective search space used: 265831760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)