Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_N12
         (182 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC199240-1|ABO33278.1|  427|Caenorhabditis elegans Hypothetical ...    27   2.3  
U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog (hedg...    25   5.4  

>AC199240-1|ABO33278.1|  427|Caenorhabditis elegans Hypothetical
           protein 2L52.1 protein.
          Length = 427

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 10  KLSTKPEPERTRRKIYLRSSSLNIVNFNKRNIELRPRAE 126
           +LST+   ++T R   L  +++ I + N  N+E R R E
Sbjct: 247 RLSTQRNNQKTIRPPELNKNNIEIKDMNSNNLEERNREE 285


>U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 6 protein.
          Length = 559

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/46 (21%), Positives = 25/46 (54%)
 Frame = +1

Query: 7   PKLSTKPEPERTRRKIYLRSSSLNIVNFNKRNIELRPRAEFGTRLD 144
           P+   +P+P R  R +Y+ S+  + +++ +     RP+  +G  ++
Sbjct: 101 PRFDLRPQPVRPVRPVYIASTPASRLSYTE-----RPQTSYGDEIE 141


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,620,157
Number of Sequences: 27780
Number of extensions: 49999
Number of successful extensions: 119
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 12,740,198
effective HSP length: 41
effective length of database: 11,601,218
effective search space used: 220423142
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)