Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_N11
         (369 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces pom...    25   2.8  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    25   2.8  
SPAC17H9.12c |||NADH-cytochrome reductase|Schizosaccharomyces po...    25   4.9  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    25   4.9  
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p...    24   8.6  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    24   8.6  

>SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 304

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 12/54 (22%), Positives = 24/54 (44%)
 Frame = -3

Query: 175 DQYQDS*YSVHLSTVCRFFYEIYFKTKTLNSNITDNTFLAVVSLCFLIIFIFFV 14
           D   D  Y++ L  +C F +       T+ S +   +    + +CFL++   F+
Sbjct: 180 DDPNDFNYAIGLYLICWFIFTFLVLLCTVRSTLAFFSLFMSLDVCFLLLACAFL 233


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -3

Query: 136 TVCRFFYEIYFKTKTLNSNITDNTFLAVVSLCFLIIFI 23
           TV ++ Y+I   + T+  N     FL  VS+C +I+ +
Sbjct: 45  TVPKWAYKIVTYSLTIQFNFKSLLFLFFVSICVVILVV 82


>SPAC17H9.12c |||NADH-cytochrome reductase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 266

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 148 QNISYPGTGRFCSRPGKRQLFRPPKN*QDFPNYRIQQQQ 264
           Q++  P    +CSRPG+  L +     ++ PN R++  Q
Sbjct: 164 QSVKSPVDIVYCSRPGQPPLLKEELE-KECPNVRVKSVQ 201


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -2

Query: 275 FLISCCCWI 249
           F +SCCCW+
Sbjct: 297 FSVSCCCWL 305


>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 531

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 11/39 (28%), Positives = 16/39 (41%)
 Frame = -3

Query: 136 TVCRFFYEIYFKTKTLNSNITDNTFLAVVSLCFLIIFIF 20
           ++C F Y         + N T NT    V +    +FIF
Sbjct: 343 SICFFIYSAVGSRALYHKNGTSNTRAGAVMIVMACLFIF 381


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 324 CNYHSDHLMGHYQSCLFS 271
           C  +S+ L  HYQ C+ S
Sbjct: 710 CGKYSNELRAHYQDCVSS 727


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,365,065
Number of Sequences: 5004
Number of extensions: 24711
Number of successful extensions: 58
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)