Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_N11
         (369 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,278...    29   1.1  
07_01_0174 - 1227871-1228043,1228303-1228423,1228519-1228588,122...    29   1.5  
11_01_0225 + 1761282-1762232,1762601-1762726,1762818-1763135           28   2.0  

>02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,
            2785402-2785486,2785517-2787578,2787732-2787753,
            2788157-2788327,2791473-2791517,2792558-2793874,
            2793962-2794012,2794090-2794188,2794352-2794504,
            2794554-2794571
          Length = 1789

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = -1

Query: 357  RVRNKTFLNTGCNYHSDHLMGHYQSCLFSY*LLLLDSVIWKILLIFWRSK*LAFAW 190
            R+ N   L+  C     H + H    +F    LL D+V   ++   WRSK L F W
Sbjct: 1137 RITNCPVLSEKCQGEDRHKIAHILEPIF----LLADTVSRVLVTANWRSKPLDFRW 1188


>07_01_0174 -
           1227871-1228043,1228303-1228423,1228519-1228588,
           1228877-1228953,1229215-1229393,1229558-1229684,
           1229849-1229861,1230351-1230378,1230426-1230516,
           1230870-1230956,1231239-1231276,1231426-1231464,
           1231553-1231699,1231899-1231958,1232033-1232111,
           1232429-1232517,1232906-1232967,1233238-1233427,
           1233929-1234068,1235813-1236147,1237086-1237133
          Length = 730

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +1

Query: 217 PKN*QDFPNYRIQQQQLIRKQA*LVVAHQVVRMVITTGIQEGFIPNP 357
           P N  D P Y +  + L+++   L    QVV  ++    Q  F+P+P
Sbjct: 330 PYNRSDDP-YAVADKWLLKENLPLTYRQQVVEFILQNSGQNNFVPDP 375


>11_01_0225 + 1761282-1762232,1762601-1762726,1762818-1763135
          Length = 464

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 11/33 (33%), Positives = 23/33 (69%)
 Frame = +2

Query: 146 YRILAILVLVGSAHAQANANYLDLQKINRIFQI 244
           Y  L++L L+G ++  A+ NYL+++ ++ I Q+
Sbjct: 296 YSSLSVLQLIGCSYRGADLNYLEIRCVSSIRQL 328


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,345,927
Number of Sequences: 37544
Number of extensions: 142420
Number of successful extensions: 243
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)