Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_N11
         (369 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46787-11|CAA86750.1|  610|Caenorhabditis elegans Hypothetical p...    27   4.2  
Z92781-2|CAB07181.2|  397|Caenorhabditis elegans Hypothetical pr...    27   5.5  
AL110478-10|CAE17956.3|  758|Caenorhabditis elegans Hypothetical...    26   7.3  
AF067622-1|AAC17543.2|  366|Caenorhabditis elegans Hypothetical ...    26   7.3  
Z72505-1|CAA96608.1|  338|Caenorhabditis elegans Hypothetical pr...    26   9.7  
Z48795-7|CAA88731.1|  347|Caenorhabditis elegans Hypothetical pr...    26   9.7  

>Z46787-11|CAA86750.1|  610|Caenorhabditis elegans Hypothetical
           protein C16C10.12 protein.
          Length = 610

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 124 FFYEIYFKTKTLNSNITDNTFLAVVSLCFLIIFIFFVG 11
           F+ E+  K  + N    DN  L V+ LC ++IF +  G
Sbjct: 564 FYRELILKQFSFNK---DNYQLDVIGLCSIVIFFYLAG 598


>Z92781-2|CAB07181.2|  397|Caenorhabditis elegans Hypothetical
           protein F09C3.3 protein.
          Length = 397

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 137 RKMYRILAILVLVGSAHAQANANYLDLQKINRIFQ 241
           RK+   L +L+ +   H  +  N  DLQ IN IF+
Sbjct: 129 RKLIEHLLVLLHLPKIHVLSFKNMSDLQSINEIFK 163


>AL110478-10|CAE17956.3|  758|Caenorhabditis elegans Hypothetical
           protein Y26D4A.13 protein.
          Length = 758

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 154 YSVHLSTVCRFFYEIYFKTKTLNSNITDNT 65
           Y+   S   +F    YF TK  N+N TDNT
Sbjct: 218 YNSDSSEKWKFIKAHYFVTKPTNTNNTDNT 247


>AF067622-1|AAC17543.2|  366|Caenorhabditis elegans Hypothetical
           protein F33E11.2 protein.
          Length = 366

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 145 VQNISYPGTGRFCSR 189
           V NISYPG  RFC +
Sbjct: 172 VDNISYPGLIRFCGK 186


>Z72505-1|CAA96608.1|  338|Caenorhabditis elegans Hypothetical
           protein C50C10.2 protein.
          Length = 338

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -3

Query: 109 YFKTK-TLNSNITDNTFLAVVSLCFLIIFIFFVGN 8
           Y K K TLNS   D+   A +   FL   +FFV +
Sbjct: 48  YRKAKATLNSATMDHNIFAFIMFYFLFNILFFVAD 82


>Z48795-7|CAA88731.1|  347|Caenorhabditis elegans Hypothetical
           protein R05H5.1 protein.
          Length = 347

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 103 KTKTLNSNITDNTFLAVVSLCFLIIFIF 20
           +T T    I ++  L  +SLCFL++++F
Sbjct: 137 ETPTAKDLIRNSVALYSMSLCFLLVYVF 164


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,575,509
Number of Sequences: 27780
Number of extensions: 143317
Number of successful extensions: 296
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)