Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_N04
(532 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L18963-1|AAC14457.1| 152|Caenorhabditis elegans unc-60 protein. 107 5e-24
AF024494-2|AAL02463.1| 152|Caenorhabditis elegans Uncoordinated... 107 5e-24
L18963-2|AAC14458.1| 165|Caenorhabditis elegans unc-60 protein. 80 8e-16
AF024494-3|AAL02461.1| 165|Caenorhabditis elegans Uncoordinated... 80 8e-16
AF024494-1|AAL02462.2| 212|Caenorhabditis elegans Uncoordinated... 78 5e-15
AC024801-11|AAN84814.2| 138|Caenorhabditis elegans Hypothetical... 29 2.1
AC024792-3|AAF60684.2| 388|Caenorhabditis elegans Hypothetical ... 28 4.8
AF003388-2|AAB54267.2| 167|Caenorhabditis elegans Hypothetical ... 27 8.4
>L18963-1|AAC14457.1| 152|Caenorhabditis elegans unc-60 protein.
Length = 152
Score = 107 bits (257), Expect = 5e-24
Identities = 58/152 (38%), Positives = 91/152 (59%), Gaps = 5/152 (3%)
Frame = +1
Query: 61 MASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGGRNAEYDSFLEDLQK- 234
MASGV V +CK Y+ + +H Y++F I +++ I VE VG +NA Y F+E+++K
Sbjct: 1 MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKKL 60
Query: 235 -GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKS 411
ECRY D E T Q QG S K+ + +CPD A V+++MLY+SS ALK S
Sbjct: 61 VEDGKECRYAAVDVEVTVQRQGAEGTSTLNKVIFVQYCPDNAPVRRRMLYASSVRALKAS 120
Query: 412 LVGVQK--YIQATDLSEASQEAVEEKLRATDR 501
L G++ +QA+++S+ +++V+ L + R
Sbjct: 121 L-GLESLFQVQASEMSDLDEKSVKSDLMSNQR 151
>AF024494-2|AAL02463.1| 152|Caenorhabditis elegans Uncoordinated
protein 60, isoform c protein.
Length = 152
Score = 107 bits (257), Expect = 5e-24
Identities = 58/152 (38%), Positives = 91/152 (59%), Gaps = 5/152 (3%)
Frame = +1
Query: 61 MASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGGRNAEYDSFLEDLQK- 234
MASGV V +CK Y+ + +H Y++F I +++ I VE VG +NA Y F+E+++K
Sbjct: 1 MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKKL 60
Query: 235 -GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKS 411
ECRY D E T Q QG S K+ + +CPD A V+++MLY+SS ALK S
Sbjct: 61 VEDGKECRYAAVDVEVTVQRQGAEGTSTLNKVIFVQYCPDNAPVRRRMLYASSVRALKAS 120
Query: 412 LVGVQK--YIQATDLSEASQEAVEEKLRATDR 501
L G++ +QA+++S+ +++V+ L + R
Sbjct: 121 L-GLESLFQVQASEMSDLDEKSVKSDLMSNQR 151
>L18963-2|AAC14458.1| 165|Caenorhabditis elegans unc-60 protein.
Length = 165
Score = 80.2 bits (189), Expect = 8e-16
Identities = 54/160 (33%), Positives = 85/160 (53%), Gaps = 18/160 (11%)
Frame = +1
Query: 61 MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVETV--------------GGR 195
M+SGV V +T+++++ + +K +RY++F I DE ++ VE
Sbjct: 1 MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59
Query: 196 NAEYDSFLEDLQK--GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKK 369
A +D F+ED++ +CRY +FDF++T G SK K+ + CPD A +KK
Sbjct: 60 KAAFDKFVEDVKSRTDNLTDCRYAVFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKK 118
Query: 370 KMLYSSSFDALKKSL-VGVQKYIQATDLSEASQEAVEEKL 486
KM+Y+SS A+K SL G Q +D SE S + + KL
Sbjct: 119 KMVYASSAAAIKTSLGTGKILQFQVSDESEMSHKELLNKL 158
>AF024494-3|AAL02461.1| 165|Caenorhabditis elegans Uncoordinated
protein 60, isoform a protein.
Length = 165
Score = 80.2 bits (189), Expect = 8e-16
Identities = 54/160 (33%), Positives = 85/160 (53%), Gaps = 18/160 (11%)
Frame = +1
Query: 61 MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVETV--------------GGR 195
M+SGV V +T+++++ + +K +RY++F I DE ++ VE
Sbjct: 1 MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59
Query: 196 NAEYDSFLEDLQK--GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKK 369
A +D F+ED++ +CRY +FDF++T G SK K+ + CPD A +KK
Sbjct: 60 KAAFDKFVEDVKSRTDNLTDCRYAVFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKK 118
Query: 370 KMLYSSSFDALKKSL-VGVQKYIQATDLSEASQEAVEEKL 486
KM+Y+SS A+K SL G Q +D SE S + + KL
Sbjct: 119 KMVYASSAAAIKTSLGTGKILQFQVSDESEMSHKELLNKL 158
>AF024494-1|AAL02462.2| 212|Caenorhabditis elegans Uncoordinated
protein 60, isoform b protein.
Length = 212
Score = 77.8 bits (183), Expect = 5e-15
Identities = 52/154 (33%), Positives = 82/154 (53%), Gaps = 18/154 (11%)
Frame = +1
Query: 61 MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVETV--------------GGR 195
M+SGV V +T+++++ + +K +RY++F I DE ++ VE
Sbjct: 1 MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59
Query: 196 NAEYDSFLEDLQK--GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKK 369
A +D F+ED++ +CRY +FDF++T G SK K+ + CPD A +KK
Sbjct: 60 KAAFDKFVEDVKSRTDNLTDCRYAVFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKK 118
Query: 370 KMLYSSSFDALKKSL-VGVQKYIQATDLSEASQE 468
KM+Y+SS A+K SL G Q +D SE S +
Sbjct: 119 KMVYASSAAAIKTSLGTGKILQFQVSDESEMSHK 152
Score = 47.6 bits (108), Expect = 6e-06
Identities = 28/74 (37%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Frame = +1
Query: 286 QCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQK--YIQATDLSEA 459
Q SE S K+ L++ CPD A V+++MLY+SS ALK SL G++ +QA+++S+
Sbjct: 142 QVSDESEMSHKE---LLNNCPDNAPVRRRMLYASSVRALKASL-GLESLFQVQASEMSDL 197
Query: 460 SQEAVEEKLRATDR 501
+++V+ L + R
Sbjct: 198 DEKSVKSDLMSNQR 211
>AC024801-11|AAN84814.2| 138|Caenorhabditis elegans Hypothetical
protein Y50D7A.10 protein.
Length = 138
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/65 (24%), Positives = 31/65 (47%)
Frame = +1
Query: 289 CQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQE 468
C+ S+ + L+ +CP+ + + +MLY+ S + + V K + D+ E E
Sbjct: 74 CKKHSDERISYPMLLIYYCPNGSSPELQMLYAGSRNFIVNE-CHVSKNTEIRDIDEIDDE 132
Query: 469 AVEEK 483
+E K
Sbjct: 133 LLESK 137
>AC024792-3|AAF60684.2| 388|Caenorhabditis elegans Hypothetical
protein Y48G1A.3 protein.
Length = 388
Score = 27.9 bits (59), Expect = 4.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 277 YTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLY 381
+ H G+ E + +F S PD+ K KKK+LY
Sbjct: 161 FIHSLCGSHEIHPVKIIFRFSKYPDSLKYKKKILY 195
>AF003388-2|AAB54267.2| 167|Caenorhabditis elegans Hypothetical
protein R10F2.4 protein.
Length = 167
Score = 27.1 bits (57), Expect = 8.4
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +2
Query: 110 K*KRIRNTATWCSTFATRNRSTSKPSADVMPNTIAFSKTCRRAAPENA 253
K KR + + +T R RS S+P P T A + A P+ A
Sbjct: 107 KVKRSESAGSSTTTTKPRTRSGSRPGTSSRPGTNASERATSAAGPKRA 154
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,318,282
Number of Sequences: 27780
Number of extensions: 222691
Number of successful extensions: 935
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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