Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_N02
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    28   0.93 
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    27   2.8  
SPAC17G8.05 |med20||mediator complex subunit Med20|Schizosacchar...    27   2.8  
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom...    27   2.8  
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    27   2.8  
SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Sch...    27   2.8  
SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.6  
SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    25   8.7  

>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 13/41 (31%), Positives = 15/41 (36%)
 Frame = +2

Query: 140  CTNCQLRRHLRCYGQGTYNWKRKSQAQCPWLRRSHKNSYPW 262
            CT C+ R H  C G         S+  CP         YPW
Sbjct: 1370 CTICERRFHYDCVGLNNEIADSVSKFTCPICMEQSGGIYPW 1410


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 180 VKVPITGNENHRLSALGSVDLTKTHIPGFGDKMTAAGK 293
           +++ IT     +LS   + +  K+ +PGFGD     GK
Sbjct: 540 LELTITALYETKLSPAAAFEKLKSWMPGFGDPKNCTGK 577


>SPAC17G8.05 |med20||mediator complex subunit
           Med20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 180

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -3

Query: 422 VLEHVVHSGTDSVEVRNLRNIWQVFSGECF-GTEIVVVVMEEIYFTGSRH 276
           +L HV + GT+SV++   R I Q F  +CF      V  + E +F   RH
Sbjct: 111 ILFHVTYDGTESVDL--ARPIIQEFFLKCFLQNNKSVTPVYESFFNQPRH 158


>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -3

Query: 371 LRNIWQVFSGECFGT--EIVVVVMEEIYFTGSRHFV 270
           +  IW V SG+C  T  E + V +  + FT +R ++
Sbjct: 203 MARIWDVLSGQCLKTLVEPINVPLSNLQFTENRKYL 238


>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 32/118 (27%), Positives = 47/118 (39%), Gaps = 9/118 (7%)
 Frame = +3

Query: 72  YYIEQYEDQPEQWANSRVRRQAGALTVNSDGTSGAMVKVPITGNENHRLSALGSVDLTKT 251
           +Y    +      A  +VR   G L+  S+G S   V+  +  N NHRL A+      K 
Sbjct: 504 FYAPDVQQMYRNIAFGKVRFPKGVLS--SEGRS--FVRGLLNRNPNHRLGAVADTTELKE 559

Query: 252 HIPGFGD---------KMTAAGKVNLFHNDNHDFSAKAFATKNLPNIPQVPNFNTVGA 398
           H P F D         K+    K N+ ++ +     K F   N+ NI  V N +   A
Sbjct: 560 H-PFFADINWDLLSKKKVQPPFKPNVQNDLDVSNFDKEFTNTNVKNINIVSNVDPANA 616


>SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +2

Query: 476 LLSGGKTESLQDSDHIAGLQRRLEE 550
           +L GGK+ +  D+D +AG + +LEE
Sbjct: 246 ILRGGKSGTNFDADSVAGAKAKLEE 270


>SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 393 GAGVDYMFKDKIGASATAAHTDVFNRNDYSLGG 491
           G+G   +F DK G    A     F++ DYS  G
Sbjct: 61  GSGASIIFADKAGLKFEAERYGKFDQIDYSTKG 93


>SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 126

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +2

Query: 110 GQLQGAPASGCTNCQLRRHLRCYGQGTYNWKRKSQAQCPWLRRS--HKNSY 256
           GQL  +P     NC L+RH        +  + +S++  P  RRS  H N +
Sbjct: 21  GQLSTSPPRRWRNCTLQRHGSRASADEFCEQYRSRSHGPQGRRSLEHDNQF 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,753,646
Number of Sequences: 5004
Number of extensions: 59115
Number of successful extensions: 179
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)