Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_N02
         (616 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78200-3|CAB01580.1|  144|Caenorhabditis elegans Hypothetical pr...    28   4.6  
AL117204-13|CAB55128.1|  286|Caenorhabditis elegans Hypothetical...    28   4.6  
AF039719-12|AAB96758.1|  293|Caenorhabditis elegans Hypothetical...    28   6.1  
AF016425-6|AAY86242.1|  104|Caenorhabditis elegans Hypothetical ...    28   6.1  

>Z78200-3|CAB01580.1|  144|Caenorhabditis elegans Hypothetical
           protein T04H1.3 protein.
          Length = 144

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
 Frame = +3

Query: 138 GALTVNSDGTSGAMVKVPITGN--ENHRLSALGSVDLTKTHIPGFGDKMTAAGKVNLFHN 311
           G L       SG +VK+   G   ++   S   S D T +    + D +T   KVN++H+
Sbjct: 35  GKLVCEGQPASGVLVKMYDDGTIYDSKLGSTTTSSDGTFSVSGTYTDILTLDPKVNIYHS 94

Query: 312 DNHDFSAKAFATKNLPN 362
            N++       T N+P+
Sbjct: 95  CNYNGPCSKKVTINIPD 111


>AL117204-13|CAB55128.1|  286|Caenorhabditis elegans Hypothetical
           protein Y116A8C.22 protein.
          Length = 286

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 140 CTNCQLRRHLRCYGQGTYNWKRKSQAQC 223
           CT CQ   HL+C G  +  W   SQ QC
Sbjct: 256 CTKCQKWVHLKCTGIRSKQW--NSQFQC 281


>AF039719-12|AAB96758.1|  293|Caenorhabditis elegans Hypothetical
           protein K04F10.7 protein.
          Length = 293

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +2

Query: 326 QCQSIRH*KPAKYSSSSELQHCRCRSGLHVQGQDWC 433
           QCQ  +    AKY      Q+C+  +  H Q   WC
Sbjct: 25  QCQKCQK-NEAKYGKPGTCQYCKLNAAFHDQKCVWC 59


>AF016425-6|AAY86242.1|  104|Caenorhabditis elegans Hypothetical
           protein F59A7.11 protein.
          Length = 104

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +3

Query: 12  LVSVLLVGVNSRYVLVEEPGYYIEQYEDQPEQWANSRVRRQAGALTVNSDGTS 170
           L++ LL  +    V+   PG   +  ED  +     R RR  G  TV +DG++
Sbjct: 4   LINSLLFTIAILAVVWGYPGQQADHVEDLTKNRNEPRARRDLGTETVRADGSA 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,403,350
Number of Sequences: 27780
Number of extensions: 346678
Number of successful extensions: 883
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)