Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_M23
(507 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha... 146 2e-36
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz... 143 1e-35
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos... 132 2e-32
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 29 0.30
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 27 1.2
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 27 1.6
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 26 3.7
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 25 8.6
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 25 8.6
>SPBC839.13c |rpl1601||60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 146 bits (353), Expect = 2e-36
Identities = 73/140 (52%), Positives = 87/140 (62%)
Frame = -1
Query: 504 CNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXX 325
C NP+RG FHFRAPS+I K VRGM+PHKT RG+ AL L+ +G PPPFD
Sbjct: 63 CRYNPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVP 122
Query: 324 XXXXVFCLKPGRKYCHVGRLSHEVGWKYRDVVRKLEDKRKVKAIKLISYERKLKKITKEA 145
V LKPGRKYC VGRLS EVGWKY D+V KLE++RKVK+ Y+ KL K K A
Sbjct: 123 AALRVLRLKPGRKYCTVGRLSSEVGWKYNDIVAKLEERRKVKSAAF--YQAKLAKQKKIA 180
Query: 144 GEKVAKATAPFTTVVQSYGY 85
AK +P + +GY
Sbjct: 181 S---AKEASPVNQKLSQFGY 197
>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 143 bits (347), Expect = 1e-35
Identities = 70/127 (55%), Positives = 82/127 (64%)
Frame = -1
Query: 504 CNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXX 325
C NP+RG FHFRAPS+I K VRGM+PHKT RG+ AL L+ +G PPPFD
Sbjct: 63 CRYNPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVP 122
Query: 324 XXXXVFCLKPGRKYCHVGRLSHEVGWKYRDVVRKLEDKRKVKAIKLISYERKLKKITKEA 145
V LKPGRKYC VGRLS EVGWKY D+V KLE++RKVK+ Y+ KL K K A
Sbjct: 123 AALRVLRLKPGRKYCTVGRLSSEVGWKYSDIVSKLEERRKVKSAAF--YQAKLAKQKKIA 180
Query: 144 GEKVAKA 124
K A +
Sbjct: 181 SAKAASS 187
>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 132 bits (320), Expect = 2e-32
Identities = 58/103 (56%), Positives = 72/103 (69%)
Frame = -1
Query: 504 CNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXX 325
C NP+RG FHFRAPS+I K VRGM+PHKT RG AL+ L+ +G PPPFD
Sbjct: 63 CRYNPSRGAFHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQALEGIPPPFDKQKRLVVP 122
Query: 324 XXXXVFCLKPGRKYCHVGRLSHEVGWKYRDVVRKLEDKRKVKA 196
V LKP RKYC +GRLS EVGWKY+++V KLE++RK+K+
Sbjct: 123 AALRVLRLKPSRKYCTIGRLSSEVGWKYKNIVSKLEERRKIKS 165
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 29.5 bits (63), Expect = 0.30
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -1
Query: 216 DKRKVKAIKLISYERKLKKITKEAGEKVAKATA-PFTTVVQSYG 88
DKR+ I L++YE++L+ + K E + P ++++ YG
Sbjct: 18 DKRETIYIDLLNYEKQLRNLNKNTREDSLQTNLNPLLSLIKKYG 61
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 27.5 bits (58), Expect = 1.2
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -1
Query: 270 RLSHEVGWKYRDVVRKLEDKRKVKAIKLISYERKLKKITKEAGEK 136
R S E K D K E+KR+ K K E+K KK KE +K
Sbjct: 428 RKSVESSEKDEDEAAKKEEKRRKKEAKKEKKEKKEKKEKKEKKKK 472
>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 27.1 bits (57), Expect = 1.6
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 211 EESEGHQADIL*EETQENHQGSRREGGESDG 119
EE E +AD + EE E +G E E DG
Sbjct: 176 EEEEEEEADEMEEEFDEEGEGDEEEEEEDDG 206
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 25.8 bits (54), Expect = 3.7
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Frame = +2
Query: 242 YFHPTS-CERRPT*QYLRPGFRQNTRSAA--GTTTRRLLSNGGGQP 370
YF P C R P Y PGF + + AA G T S G+P
Sbjct: 219 YFTPGKHCPRLPVRVYTTPGFSEQGKFAAELGAKTLDFFSGVFGEP 264
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 24.6 bits (51), Expect = 8.6
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = -1
Query: 171 KLKKITKEAGEKVAKATA 118
K KKITKEA +++AK ++
Sbjct: 28 KSKKITKEAAKEIAKQSS 45
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 24.6 bits (51), Expect = 8.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 247 PSDFVRETSHMTVFTARLQTEYT 315
PSDF+R S +V T+ L+T T
Sbjct: 631 PSDFIRLNSEESVGTSSLRTSQT 653
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,996,610
Number of Sequences: 5004
Number of extensions: 40292
Number of successful extensions: 136
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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