Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_M21
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00048-13|AAB53830.1|  484|Caenorhabditis elegans Maternal effec...   303   8e-83
U00048-12|AAL27228.1|  507|Caenorhabditis elegans Maternal effec...   303   8e-83
U64842-2|AAB37084.1|  462|Caenorhabditis elegans Hypothetical pr...    30   1.1  
U12787-1|AAA92672.1|  458|Caenorhabditis elegans HMG CoA synthas...    30   1.1  
U10402-5|AAA19066.2|  650|Caenorhabditis elegans Tryptophanyl (w...    30   1.1  
U80030-3|AAG24160.2|  367|Caenorhabditis elegans Serpentine rece...    28   4.4  
AF039049-2|AAB94252.2|  297|Caenorhabditis elegans Serpentine re...    28   5.8  

>U00048-13|AAB53830.1|  484|Caenorhabditis elegans Maternal effect
           lethal protein32, isoform a protein.
          Length = 484

 Score =  303 bits (743), Expect = 8e-83
 Identities = 137/198 (69%), Positives = 166/198 (83%)
 Frame = +3

Query: 3   DPELFNLITKEKKRQQAGLEMIASENFTSVPVLQCLSSCLHNKYSEGMPYQRYYGGNEFI 182
           DPE+F+++  EKKRQ+ GLE+IASENFTS  V+  L S + NKYSEG P  RYYGGNEFI
Sbjct: 33  DPEVFDIMKNEKKRQRRGLELIASENFTSKAVMDALGSAMCNKYSEGYPGARYYGGNEFI 92

Query: 183 DEIEILAQNRSLETYKLNPEEWGVNVQPYSGSPANFAVYTGVVEPHGRIMGLDLPDGGHL 362
           D++E+L Q R+LE + L+P +WGVNVQP SGSPANFAVYT +V  +GRIMGLDLPDGGHL
Sbjct: 93  DQMELLCQKRALEVFGLDPAKWGVNVQPLSGSPANFAVYTAIVGSNGRIMGLDLPDGGHL 152

Query: 363 THGFFTANKKISATSIFFESMPYKVDPTTGLIDYDKLAETAKLFKPRVIIAGMSCYSRCL 542
           THGFFT  +K+SATS FF+S+PYKVDPTTGLIDYDKL + A LF+P+ IIAG+SCY+R L
Sbjct: 153 THGFFTPARKVSATSEFFQSLPYKVDPTTGLIDYDKLEQNAMLFRPKAIIAGVSCYARHL 212

Query: 543 DYERFRQIADENGAYLMA 596
           DYERFR+IA + GAYLM+
Sbjct: 213 DYERFRKIATKAGAYLMS 230


>U00048-12|AAL27228.1|  507|Caenorhabditis elegans Maternal effect
           lethal protein32, isoform b protein.
          Length = 507

 Score =  303 bits (743), Expect = 8e-83
 Identities = 137/198 (69%), Positives = 166/198 (83%)
 Frame = +3

Query: 3   DPELFNLITKEKKRQQAGLEMIASENFTSVPVLQCLSSCLHNKYSEGMPYQRYYGGNEFI 182
           DPE+F+++  EKKRQ+ GLE+IASENFTS  V+  L S + NKYSEG P  RYYGGNEFI
Sbjct: 56  DPEVFDIMKNEKKRQRRGLELIASENFTSKAVMDALGSAMCNKYSEGYPGARYYGGNEFI 115

Query: 183 DEIEILAQNRSLETYKLNPEEWGVNVQPYSGSPANFAVYTGVVEPHGRIMGLDLPDGGHL 362
           D++E+L Q R+LE + L+P +WGVNVQP SGSPANFAVYT +V  +GRIMGLDLPDGGHL
Sbjct: 116 DQMELLCQKRALEVFGLDPAKWGVNVQPLSGSPANFAVYTAIVGSNGRIMGLDLPDGGHL 175

Query: 363 THGFFTANKKISATSIFFESMPYKVDPTTGLIDYDKLAETAKLFKPRVIIAGMSCYSRCL 542
           THGFFT  +K+SATS FF+S+PYKVDPTTGLIDYDKL + A LF+P+ IIAG+SCY+R L
Sbjct: 176 THGFFTPARKVSATSEFFQSLPYKVDPTTGLIDYDKLEQNAMLFRPKAIIAGVSCYARHL 235

Query: 543 DYERFRQIADENGAYLMA 596
           DYERFR+IA + GAYLM+
Sbjct: 236 DYERFRKIATKAGAYLMS 253


>U64842-2|AAB37084.1|  462|Caenorhabditis elegans Hypothetical
           protein F25B4.6 protein.
          Length = 462

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +3

Query: 57  LEMIASENFTSVPVLQCLSSCLHNKYSEGMPYQR--YYGGNEFIDEIEILAQNRSLETYK 230
           +E+   +NF     L+  ++    KY+ G+  Q+  +   NE I  I +    + +ETYK
Sbjct: 19  IELYFPQNFVDQNDLEKFNNVSSGKYTIGLGQQQMGFCSDNEDIVSISLTVTRKLIETYK 78

Query: 231 LNPEEWG 251
           ++ +  G
Sbjct: 79  ISTDSIG 85


>U12787-1|AAA92672.1|  458|Caenorhabditis elegans HMG CoA synthase
           protein.
          Length = 458

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +3

Query: 57  LEMIASENFTSVPVLQCLSSCLHNKYSEGMPYQR--YYGGNEFIDEIEILAQNRSLETYK 230
           +E+   +NF     L+  ++    KY+ G+  Q+  +   NE I  I +    + +ETYK
Sbjct: 15  IELYFPQNFVDQNDLEKFNNVSSGKYTIGLGQQQMGFCSDNEDIVSISLTVTRKLIETYK 74

Query: 231 LNPEEWG 251
           ++ +  G
Sbjct: 75  ISTDSIG 81


>U10402-5|AAA19066.2|  650|Caenorhabditis elegans Tryptophanyl (w)
           trna synthetaseprotein 2, isoform a protein.
          Length = 650

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = +3

Query: 18  NLITKEKKRQQAGLEMIASENFTSVPVLQCLSSCLHNK 131
           N + KEKK    G +    EN    P  QC S CL NK
Sbjct: 226 NKLKKEKKENNGGSDRNLDENSLFHPTFQC-SICLENK 262


>U80030-3|AAG24160.2|  367|Caenorhabditis elegans Serpentine
           receptor, class w protein115 protein.
          Length = 367

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 206 LCQYFYFINEFISAIVPLI 150
           L +YFY  N F+S IVP I
Sbjct: 215 LAKYFYLFNSFVSDIVPCI 233


>AF039049-2|AAB94252.2|  297|Caenorhabditis elegans Serpentine
           receptor, class x protein67 protein.
          Length = 297

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 11/63 (17%)
 Frame = -3

Query: 230 LVCFQ*PILCQYFYFINEFISAIVPL---IWHTL--------*VFIVKT*TQAL*YRN*C 84
           L C++  +L  +   IN F + +VPL   IW T+         ++IV+T   A+ Y+  C
Sbjct: 84  LFCYESSVLTHFCISINRFCAVLVPLKYDIWFTIKNTKKIIALLWIVETIIAAIFYQYLC 143

Query: 83  KVF 75
            VF
Sbjct: 144 NVF 146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,795,030
Number of Sequences: 27780
Number of extensions: 303855
Number of successful extensions: 690
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)