Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_M19
(451 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 28 0.58
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom... 27 1.8
SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc... 26 2.3
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo... 25 4.1
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 25 4.1
SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator Tip4... 25 7.1
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.1
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom... 24 9.4
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 24 9.4
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa... 24 9.4
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc... 24 9.4
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 24 9.4
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 28.3 bits (60), Expect = 0.58
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Frame = +1
Query: 82 RSYEIVARHVLGAAPKPFDKHTFMPSALD----FYQTALRDPAF-YQLYDRIVGYINAFK 246
+++E +R+V+ A P D +TF S LD + F Q +DR V Y+N +
Sbjct: 135 QTFEGHSRYVMSLAINPKDTNTFASSCLDGTVKVWSFGSSVANFTLQAHDRGVNYVNYYP 194
Query: 247 HYLKPY 264
KPY
Sbjct: 195 AGDKPY 200
>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 396
Score = 26.6 bits (56), Expect = 1.8
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 264 IRLQVMLECVNVTH-NPVI*LIECRVSKCGLVKVKRTGHEGVLVEWF 127
I Q L+ + TH NPV EC +S+C L K G E L + F
Sbjct: 233 ILFQNALDALPTTHGNPV----ECDISRCPLNACKIAGQETELADLF 275
>SPCC622.12c |||NADP-specific glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 451
Score = 26.2 bits (55), Expect = 2.3
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +1
Query: 190 DPAFYQLYDRIVGYINAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFFD 339
+P F Q Y IVG I + K + + +P+ K + I + V+E VT+ D
Sbjct: 6 EPEFQQAYKEIVGSIESSKLF-EVHPELKRVLPIISIPERVLEFRVTWED 54
>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
Sir2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 25.4 bits (53), Expect = 4.1
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +1
Query: 88 YEIVARHVLGAAPKPFDKHTFMPSALDFYQTALRD 192
Y +ARH L + FD HTF + FY T RD
Sbjct: 183 YARLARHGLSEPSEMFDIHTFRENPEIFY-TFARD 216
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 25.4 bits (53), Expect = 4.1
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Frame = +2
Query: 122 HLNHSTSTPSCPVRLTF--TKPHFETLHSISYMTGLWVTLT 238
HL S STPS LTF T + T H LW L+
Sbjct: 605 HLIDSISTPSVCTSLTFAPTGDYLATTHVDQVGISLWTNLS 645
>SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator
Tip41|Schizosaccharomyces pombe|chr 3|||Manual
Length = 252
Score = 24.6 bits (51), Expect = 7.1
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +1
Query: 1 EKAINFVGNYWQENADLYEEEVTKDYQRSYEIVARHVLG 117
+K +N N W L+E+E+ + + +++ AR V G
Sbjct: 131 QKILNAGQNLWFNEIILFEDELADNGKSMFDVRARVVQG 169
>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 390
Score = 24.6 bits (51), Expect = 7.1
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +2
Query: 8 QLTLSETIGKRTPICMKKKLQRIINDLMKLSLAMCSVQHLNHSTSTP-SCPVRL 166
+L S TI P+C++ K + +N L+L+ + L TS P CP++L
Sbjct: 228 ELNASVTISG-IPVCIRSKEKMFLNPDCALTLSFICI-FLAQYTSIPLPCPLQL 279
>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
Pof7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 361
Score = 24.2 bits (50), Expect = 9.4
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +1
Query: 31 WQENADLYEEEVTKDYQRSYE 93
WQ++ EEE+ + YQ+S++
Sbjct: 170 WQQSIKSIEEELVEKYQQSWK 190
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 24.2 bits (50), Expect = 9.4
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = -2
Query: 384 FFGQEYTVSGIKLAIVKECD*FLNDNIIDFNADEMKFLLRIRLQV 250
F G+ + +S + I+ EC L N+ D +E++ L R+ + V
Sbjct: 1153 FIGELFKLSMLSEKIMHECIKRLLGNVTDPEEEEIESLCRLLMTV 1197
>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 24.2 bits (50), Expect = 9.4
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 224 WVTLTHSSIT*SLILKRNFISSALKSMMLSLRN*SH 331
W T HSS+ +L R + S + ++ LRN H
Sbjct: 982 WTTCLHSSLVDNLGKYRKYDGSKILDILRVLRNKRH 1017
>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 24.2 bits (50), Expect = 9.4
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Frame = +1
Query: 208 LYDRIVGYINAFKHYLKP----YPQEKLHFVGVKINDVVVEKL 324
+Y +++G +N F+ ++ Y + + VKI+ +VV+KL
Sbjct: 385 VYYKLIGILNRFRKSVQRQEENYVNTRSTILSVKIHHIVVQKL 427
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 24.2 bits (50), Expect = 9.4
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 202 YQLYDRIVGYINAFKHYL 255
YQ+ +R Y+NAF H+L
Sbjct: 117 YQISERNTVYLNAFFHFL 134
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,834,677
Number of Sequences: 5004
Number of extensions: 36978
Number of successful extensions: 111
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -