Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_M19
         (451 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0890 - 32546918-32547088,32547224-32547334,32547705-325478...    27   5.3  
04_04_1189 + 31586991-31587291,31587358-31587397,31587449-315875...    27   9.2  

>02_05_0890 -
           32546918-32547088,32547224-32547334,32547705-32547884,
           32547960-32548064,32548333-32548431,32548524-32548679,
           32548772-32548850,32549213-32549278,32549382-32549536,
           32549675-32550034,32550150-32550305,32550779-32550856,
           32551471-32551812
          Length = 685

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
 Frame = +2

Query: 44  PICMKKKLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVRLTFTK--PHFETLHSISYMT 217
           PICM       +         MC V HL+H +  P C   LT  +  P+F     +  M+
Sbjct: 61  PICMAVIKDAFLTACGHSFCYMCIVTHLSHKSDCPCCGNYLTKAQLYPNFLLDKVLKKMS 120

Query: 218 GLWVTLTHSSI 250
              +  T S I
Sbjct: 121 ARQIAKTASPI 131


>04_04_1189 +
           31586991-31587291,31587358-31587397,31587449-31587534,
           31587535-31588097,31588250-31589913,31589956-31590066,
           31590152-31591181,31591234-31591406,31591535-31591814,
           31592275-31592331
          Length = 1434

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 232 INAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFFDYSQ 348
           IN+ ++ L PY    L F+G    DVV+ + +T F + Q
Sbjct: 639 INSLQNSLNPYHLRYLEFIGA-YGDVVLPQALTSFYHLQ 676


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,338,250
Number of Sequences: 37544
Number of extensions: 219645
Number of successful extensions: 492
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)