Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_M18
         (532 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo...    31   0.14 
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    28   1.00 
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    26   3.0  
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po...    26   4.0  
SPBC215.11c |||aldo/keto reductase, unknown biological role|Schi...    25   7.0  
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    25   7.0  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    25   9.3  
SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    25   9.3  

>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
           decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 437

 Score = 30.7 bits (66), Expect = 0.14
 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
 Frame = +2

Query: 74  GGNLAHVVGFDESSVLMLGDKK--RTKESEALRATLELPSDSCIDFVQTVDGLVFSSTNY 247
           GG L  V G   S   +LGD+K  R K S A+ +   +P     +F + ++G+ +S  + 
Sbjct: 168 GGQLEQVKGITYSLDALLGDEKLARLKRSHAIPSPDHIPHIRQEEFAK-LNGIHYSLQDL 226

Query: 248 LKLDGGKRKQFLQTAA 295
           +  D G+R   ++ A+
Sbjct: 227 MGHDHGERPSHVKDAS 242


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 27.9 bits (59), Expect = 1.00
 Identities = 28/78 (35%), Positives = 38/78 (48%)
 Frame = -2

Query: 234 ENTSPSTV*TKSMQESDGSSNVALSASDSLVLFLSPSIRTDDSSNPTTCARFPPHLSSGV 55
           E+TS S     S  ESD  S+ + S SDS+    +P   +D S   T+ AR     +SG 
Sbjct: 79  EHTSSSR---SSHDESDSMSSSSESDSDSVSSESNPKSYSDSS---TSSAR--SSSTSGS 130

Query: 54  TVTIDIDIPRFSNNALNT 1
               D   P +S+NA NT
Sbjct: 131 ISLYDDYYPAYSSNAPNT 148


>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +2

Query: 113 SVLMLGDKKRTKESEALRATLELPSDSCIDFVQTVDGLVFSSTN 244
           ++L   DK++  E + LR    +  +  +  +QT++ + F ST+
Sbjct: 59  NILSNDDKRKWHEKDYLRNQYSVQIEDVLQHLQTIEKIPFESTS 102


>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 556

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +3

Query: 177 NSHLTPALISFRR-STGSYFXXXXXXXXXEARESSSCRLQRTLSCRT*RGNY*CWNAHV 350
           N + T  + S R    G++          E  ++++C+  RT+S  T R     WN HV
Sbjct: 287 NFYPTDTVTSLRWVQRGTHLAVGTHNGSVEIWDAATCKKTRTMSGHTERVGALSWNDHV 345


>SPBC215.11c |||aldo/keto reductase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 306

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +2

Query: 65  LKCGGNLAHVVGFDESSVLMLGDKKRTKESEALRATLELPSDSCIDFVQTVD 220
           +K G  + + +GF    V   G     K+ EA  ATL+   +  I+F+ T D
Sbjct: 18  VKVGDMVVNRMGFGAMRVTGDGIWDEPKDKEACIATLKRLPELNINFIDTAD 69


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1111

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 440 TEEAIDHICDDLCYYYIFKIRA 505
           ++EA+  +C +  Y+Y F IRA
Sbjct: 674 SDEALARLCREFQYFYPFDIRA 695


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +2

Query: 254 LDGGKRKQFLQTAAHAIMQNMTRELLMLECTCTYVDPFRVRSVCFTKDRTE 406
           +D   R+ FL      +     REL ML    +++D  RV SVC  +D  E
Sbjct: 655 IDSSVRESFLLL----LQAERKRELDMLTIADSFLDLSRVESVCPVEDVEE 701


>SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 624

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +1

Query: 250 ETRRRQEKAVPADCSARYHAEHDEGTTNAGMHMYI 354
           ++R  +EKA+PA+ S      ++ GT + G+  ++
Sbjct: 253 DSRLEEEKAIPANTSIFEFTPYEFGTWDNGIKAFL 287


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,103,366
Number of Sequences: 5004
Number of extensions: 38736
Number of successful extensions: 121
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)