Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_M18
         (532 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0445 - 33982018-33982965,33984308-33984463                       31   0.76 
02_03_0307 + 17546263-17546299,17546522-17548018,17548859-175489...    29   2.3  
01_03_0200 + 13744735-13745037,13745071-13745610,13745704-137458...    29   2.3  
07_03_0874 - 22202699-22203070,22204239-22204874                       28   5.4  
04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251     27   7.1  
02_04_0546 - 23782400-23782599,23782744-23782830,23782923-237834...    27   7.1  
01_01_0822 - 6401993-6402133,6402542-6402708,6402865-6402966,640...    27   9.4  

>03_06_0445 - 33982018-33982965,33984308-33984463
          Length = 367

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +2

Query: 146 KESEALRATLELP-SDSCIDFVQTVDGLVFSSTNYLKLDGGKRKQFLQTAAHAIMQNMTR 322
           K ++A     + P +D C+D ++ + GL  ++   +    GKR ++L    H+ +Q+M  
Sbjct: 14  KAADAAAGADDSPEADRCLDAMRRLRGLRVTTDVLVSTQVGKRLRYLTKHPHSDIQSMAT 73

Query: 323 ELL 331
           +LL
Sbjct: 74  DLL 76


>02_03_0307 +
           17546263-17546299,17546522-17548018,17548859-17548949,
           17549054-17549621,17550591-17550670,17550993-17551077,
           17551172-17551263,17551355-17551423,17551587-17551655,
           17552217-17552510,17552761-17552797,17552883-17552972,
           17553520-17553585,17553704-17553818,17553902-17553940,
           17554519-17554700
          Length = 1136

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +2

Query: 116 VLMLGDKKRTKESEALRATLELPSDSCIDFVQTVDGLVFSSTNYLKL 256
           V+  GDK   +ES    +T+ LPS  C D V   +     ST  L L
Sbjct: 198 VIECGDKVAQQESSTQESTVSLPSSECGDKVAQQESSTQESTVSLPL 244


>01_03_0200 +
           13744735-13745037,13745071-13745610,13745704-13745862,
           13748992-13749123,13749282-13749472,13749541-13749792,
           13750248-13750323,13750411-13750602,13750688-13750689,
           13753230-13753287,13753736-13754941
          Length = 1036

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +2

Query: 68  KCGGNLAHVVGFDESSVLMLGDKKRT-KESEALRATLELPSDSCIDFVQTVDGLVFSSTN 244
           + GG+LA++V      VL   D+    K  EAL+  +E   D  ++F+  V  L+F    
Sbjct: 767 RAGGDLANLV--HPGDVLHTTDELTDRKRREALQKAMEGKLDESLEFLAGVTALLFLGLE 824

Query: 245 YLKLDG 262
            L L+G
Sbjct: 825 GLALEG 830


>07_03_0874 - 22202699-22203070,22204239-22204874
          Length = 335

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -2

Query: 165 LSASDSLVLFLSPSIRTDDSSNPTTCARFPPHLSSG 58
           ++A+  L L L+PS  TD  S P + A+ P + SSG
Sbjct: 5   VAAALLLALLLAPSAATDVPSYPLSQAQSPANTSSG 40


>04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251
          Length = 1821

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +2

Query: 248 LKLDGGKRKQFLQTAAHAIMQNMTRELLMLECTCTYVDP 364
           L L G     F Q+    + +     LL +  TCTYVDP
Sbjct: 702 LVLIGKHSSLFFQSFKDVVQKGHHLRLLQISETCTYVDP 740


>02_04_0546 -
           23782400-23782599,23782744-23782830,23782923-23783442,
           23783801-23784000,23784457-23784561,23784923-23785020,
           23785168-23785271
          Length = 437

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = +1

Query: 223 ARIFVDELLE---TRRRQEKAVPADCSARYHAEHDEGTTNAGMHMYIRGSIPRSL 378
           AR+F+  LLE   +  + +  V A+CS+      +E +T+ G H  ++ S  + +
Sbjct: 298 ARVFMQNLLEVPCSENKSDSQVAANCSSEDIDPANESSTSNGNHSDVQESCHKDI 352


>01_01_0822 -
           6401993-6402133,6402542-6402708,6402865-6402966,
           6403437-6403577,6403685-6403768,6403858-6404164,
           6404286-6404357
          Length = 337

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
 Frame = +2

Query: 41  SIVTVTPELKC--GGNLAH----VVGFDESSVLMLGDKKRTKESEALRATLELPSDSC 196
           SI+T +PE     GGN+      ++  D S+  + G K    + E L    E PSDSC
Sbjct: 120 SILTKSPESDSSEGGNIEVNEQCMLPVDTSAAEISGGKSIDVDEEVLSGNSEKPSDSC 177


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,027,356
Number of Sequences: 37544
Number of extensions: 269702
Number of successful extensions: 754
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)