Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_M18
         (532 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U49830-13|AAK31474.1|  826|Caenorhabditis elegans Hypothetical p...    31   0.39 
Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z81116-12|CAB03309.1|  414|Caenorhabditis elegans Hypothetical p...    28   4.8  
Z49071-5|CAA88879.1|  609|Caenorhabditis elegans Hypothetical pr...    27   6.3  
AF000198-6|AAB53056.2|  526|Caenorhabditis elegans Calcium chann...    27   6.3  
Z72512-8|CAH04717.1|  583|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z72512-7|CAA96668.3|  568|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>U49830-13|AAK31474.1|  826|Caenorhabditis elegans Hypothetical
           protein C33F10.2 protein.
          Length = 826

 Score = 31.5 bits (68), Expect = 0.39
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 235 VDELLETRRRQEKAVPADCSARYHAEHDEGTT 330
           +DE+++  R  EK +P  C+ R HA   +GT+
Sbjct: 673 IDEIIKNSRGYEKLIPPSCTFRAHASPWKGTS 704


>Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical
           protein R10E11.1b protein.
          Length = 2056

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -2

Query: 204 KSMQESDGSSNV-ALSASDSLVLFLSPSIRTDDSSNPTTCA 85
           KS  +SD  S + ALSA +SL  F + S  TD  +NP+T A
Sbjct: 8   KSRADSDYDSGLDALSALESLEAFPTSSKDTDVDNNPSTSA 48


>Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical
           protein R10E11.1a protein.
          Length = 2045

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -2

Query: 204 KSMQESDGSSNV-ALSASDSLVLFLSPSIRTDDSSNPTTCA 85
           KS  +SD  S + ALSA +SL  F + S  TD  +NP+T A
Sbjct: 8   KSRADSDYDSGLDALSALESLEAFPTSSKDTDVDNNPSTSA 48


>Z81116-12|CAB03309.1|  414|Caenorhabditis elegans Hypothetical
           protein T06C12.13 protein.
          Length = 414

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 107 ESSVLMLGDKKRTKESEALRATLELPSDSCIDFVQTVD 220
           E SV M G++  TK   A+     +  DSCID+ +  D
Sbjct: 248 EMSVKMFGNQVLTKRKFAISNEKLMVMDSCIDYSEITD 285


>Z49071-5|CAA88879.1|  609|Caenorhabditis elegans Hypothetical
           protein T22C8.7 protein.
          Length = 609

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 286 DCSARYHAEHDEGTTNAGMHMYIRGSIPRSLCLLH 390
           +C +     H   T   G H+Y+RG  P+++C L+
Sbjct: 37  ECGSEGIRLHINPTGTFGGHVYVRGFFPQTVCHLN 71


>AF000198-6|AAB53056.2|  526|Caenorhabditis elegans Calcium channel,
           beta subunit protein1 protein.
          Length = 526

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 17/63 (26%), Positives = 31/63 (49%)
 Frame = +1

Query: 235 VDELLETRRRQEKAVPADCSARYHAEHDEGTTNAGMHMYIRGSIPRSLCLLHERQDRSCS 414
           ++ + E  R  +  V  DC    H      T+ A +H+YI+ S P+ L  L + + +S S
Sbjct: 278 IERIFELARSMQLVV-LDCDTINHPSQLAKTSLAPIHVYIKISSPKVLQRLIKSRGKSQS 336

Query: 415 QTI 423
           + +
Sbjct: 337 RNM 339


>Z72512-8|CAH04717.1|  583|Caenorhabditis elegans Hypothetical
           protein R07B5.8b protein.
          Length = 583

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
 Frame = +2

Query: 146 KESEALRATLELPSDSCIDFVQ-----TVDGLVFSSTNYLKLDGGKRKQFLQTAAHAIMQ 310
           +ESEA + T       C+D+V      ++DG    S   ++ D  +RK   +T  H  M+
Sbjct: 428 RESEASKETKVQYDPECLDWVPRKMRPSMDGYHELSKEEIEQDEQRRKSIQKTPVHVSME 487

Query: 311 NMT 319
             T
Sbjct: 488 KAT 490


>Z72512-7|CAA96668.3|  568|Caenorhabditis elegans Hypothetical
           protein R07B5.8a protein.
          Length = 568

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
 Frame = +2

Query: 146 KESEALRATLELPSDSCIDFVQ-----TVDGLVFSSTNYLKLDGGKRKQFLQTAAHAIMQ 310
           +ESEA + T       C+D+V      ++DG    S   ++ D  +RK   +T  H  M+
Sbjct: 473 RESEASKETKVQYDPECLDWVPRKMRPSMDGYHELSKEEIEQDEQRRKSIQKTPVHVSME 532

Query: 311 NMT 319
             T
Sbjct: 533 KAT 535


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,877,668
Number of Sequences: 27780
Number of extensions: 229737
Number of successful extensions: 691
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)