Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_M17
         (595 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    27   2.7  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    26   4.8  

>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +1

Query: 169 GTCRPDLNSRINHTCD--CPLGFAGASCQM 252
           G C   +  R+NH+CD  C + F GA  Q+
Sbjct: 182 GMCLDTILCRLNHSCDPNCQIIFDGAIVQL 211


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 5/78 (6%)
 Frame = +3

Query: 225  WICRRFLSNAFAITSKCRLQRQRICRITC-----GIVTLR*FTIRTCSYCARYSYNQRWC 389
            W CR  +S  F        Q   + R+       G++ L      T S    +S  + WC
Sbjct: 1731 WYCRYGVS--FETQPNLNFQNSELSRLQTKMHIPGVIELSNHLCLTAS-STEWSLIKHWC 1787

Query: 390  TFISERGTQSV*PRRLHP 443
             F +E G     PR  +P
Sbjct: 1788 NFFTETGPLCDFPRAYYP 1805


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,549,735
Number of Sequences: 5004
Number of extensions: 53219
Number of successful extensions: 140
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)