Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_M17
(595 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0918 + 12381662-12383118,12383249-12384707 37 0.011
11_06_0193 - 21132793-21132986,21133376-21133504,21133648-21133681 34 0.098
12_02_0821 + 23443733-23444425 32 0.30
02_05_1177 + 34739359-34740304,34740401-34740568,34740672-34741852 30 1.6
09_05_0012 - 20063456-20064601 29 2.1
01_05_0621 + 23756682-23757075,23757530-23757726,23757825-23758139 29 2.1
02_04_0413 + 22681957-22682035,22682253-22682788 28 4.9
12_01_0672 + 5731288-5731356,5732032-5732117,5732634-5732724,573... 28 6.5
01_01_1104 + 8747053-8747478 28 6.5
02_04_0274 - 21455942-21456325,21456453-21456521,21456622-214566... 27 8.5
02_01_0011 + 78277-78487,78594-79417 27 8.5
>03_02_0918 + 12381662-12383118,12383249-12384707
Length = 971
Score = 37.1 bits (82), Expect = 0.011
Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Frame = +1
Query: 151 RPCRNGG-TCRPDLNSRINHTCDCPLGFAGASCQ--MPLQLLQSVGFSGNGYV-ELPAEL 318
RPC G TC P L R+ G +G + + L+ LQS+ SGN + +LPA+L
Sbjct: 60 RPCAWAGVTCDP-LTGRVAGLSLAGFGLSGKLGRGLLRLESLQSLSLSGNNFSGDLPADL 118
Query: 319 LRYDDLQS 342
R DLQS
Sbjct: 119 ARLPDLQS 126
>11_06_0193 - 21132793-21132986,21133376-21133504,21133648-21133681
Length = 118
Score = 33.9 bits (74), Expect = 0.098
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +1
Query: 106 PLITSRIGYSDPCSLRPCRNGGTCRPDLNSRINHTCDCPLGF 231
P +T+ Y DPC L+ C +GG+C + +S H C C GF
Sbjct: 2 PSLTNLSIY-DPCLLQYCGDGGSC--ERSSEFGHRCACHDGF 40
>12_02_0821 + 23443733-23444425
Length = 230
Score = 32.3 bits (70), Expect = 0.30
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = +1
Query: 127 GYSDPCSLRPCRNGGTCRPDLNSRINHTCDCPLG--FA-GASCQMP 255
G++ P + P GG P L ++ CDCPLG F+ GA+C+ P
Sbjct: 124 GFNVPVVVSPQAVGGGQCPALGCVVDLNCDCPLGQRFSDGAACRGP 169
>02_05_1177 + 34739359-34740304,34740401-34740568,34740672-34741852
Length = 764
Score = 29.9 bits (64), Expect = 1.6
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +1
Query: 13 CRNGGSCAIDSISCICPLGFTGTYCENRVPNPLITSRIGYSDPCSLRPCRNGGTCRPDLN 192
CR+ S D+I G+ C+ NP + + C LRP + G C D
Sbjct: 280 CRSTNSECFDTID---GQGYRCNCCQGYEGNPYLDGGCTDINEC-LRPEKYG--CYGDCT 333
Query: 193 SRI-NHTCDCPLGFAG 237
+ + +HTC CP G +G
Sbjct: 334 NMLGSHTCVCPPGTSG 349
>09_05_0012 - 20063456-20064601
Length = 381
Score = 29.5 bits (63), Expect = 2.1
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Frame = +1
Query: 259 QLLQSVGFSGNGYVELPAELLRYDDLQSEPAVIAL-------AIHTTNDGVLLYQREALS 417
QL + +G +G E +R+ QSEPA++A AI TT DGVL E+ S
Sbjct: 151 QLTRELGHKSDG------ETIRWLMQQSEPAIVAATGTGTVPAIATTVDGVLRIPTESPS 204
Query: 418 PYDRGD 435
RGD
Sbjct: 205 AAARGD 210
>01_05_0621 + 23756682-23757075,23757530-23757726,23757825-23758139
Length = 301
Score = 29.5 bits (63), Expect = 2.1
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 342 RTCSYCARYSYNQRWCTFISERG 410
R CSYC Y +N R C+ + G
Sbjct: 3 RKCSYCGNYGHNSRTCSSSASAG 25
>02_04_0413 + 22681957-22682035,22682253-22682788
Length = 204
Score = 28.3 bits (60), Expect = 4.9
Identities = 21/71 (29%), Positives = 24/71 (33%), Gaps = 3/71 (4%)
Frame = +1
Query: 1 GTCQCRNGGSCAIDSISC---ICPLGFTGTYCENRVPNPLITSRIGYSDPCSLRPCRNGG 171
G QC SC C C G +G C P+P + PC PC G
Sbjct: 125 GGGQCPPSPSCENHHPPCKPGCCCCGCSGGECPPP-PSPPCQHECPPTPPCEHPPCSESG 183
Query: 172 TCRPDLNSRIN 204
C NS N
Sbjct: 184 CCDKGCNSCCN 194
>12_01_0672 +
5731288-5731356,5732032-5732117,5732634-5732724,
5732886-5732935,5733339-5733408,5733508-5733617,
5733943-5734463,5734856-5734949,5735095-5735225,
5735241-5736274,5736383-5736457,5736615-5737104,
5737375-5738009,5738166-5738378
Length = 1222
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 225 WICRRFLSNAFAITSKCRLQRQRICRITC 311
W C + N AIT++C L + ITC
Sbjct: 52 WFCYTCIDNWSAITNRCPLCKSEFQHITC 80
>01_01_1104 + 8747053-8747478
Length = 141
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +1
Query: 91 NRVPNPLITSRIGYSDPCSLRPCRNGGTCRPDLNSR 198
N+VP P +T +GY + + PC + C + +++
Sbjct: 9 NKVPIPTVTLELGYGEDKAHTPCIDTTDCSKETHAK 44
>02_04_0274 -
21455942-21456325,21456453-21456521,21456622-21456687,
21456796-21456861,21456982-21457149,21457262-21457351,
21457578-21457622,21458112-21458747
Length = 507
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +1
Query: 7 CQCRNGGSCAIDSISCICPLGFTGTYCENRVPNPLITSRIGY-SDPCSL 150
C +NGG+ ++S + P G N P P + +R G +DP S+
Sbjct: 262 CGGKNGGAAPFVNLSEVLPKGNGSGSAGNGAPKPRVRARRGQATDPHSI 310
>02_01_0011 + 78277-78487,78594-79417
Length = 344
Score = 27.5 bits (58), Expect = 8.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 73 TGTYCENRVPNPLITSRIGYSD 138
TG +C R+P I SR+G +
Sbjct: 57 TGRFCNGRIPTDFIASRLGLKE 78
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,007,351
Number of Sequences: 37544
Number of extensions: 366545
Number of successful extensions: 913
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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