Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_M17
         (595 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.3  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   2.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.2  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   6.9  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   6.9  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   9.1  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 223 LGFAGASCQMPLQLLQSVGFSGNGYVELP 309
           +GF G    +PL+ L+ +  SGN  V  P
Sbjct: 878 IGFIGNLTFLPLRSLEILRLSGNRLVTFP 906


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 18/70 (25%), Positives = 28/70 (40%)
 Frame = +2

Query: 245 VKCLCNYFKVSASAATDMSNYLRNCYVTMIYNQNLQLLRSLFIQPTMVYFYIRERHSVRM 424
           V    N +K      TD++ Y+     T+ Y  NL L   L     ++ FY+      ++
Sbjct: 206 VPAYLNTYKGDFPTETDITFYIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEAGEKV 265

Query: 425 TAATSSSLEL 454
           T   S  L L
Sbjct: 266 TLGISILLSL 275


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 218 QSQVWLILEFKSGLHVPPLRQGRREHGSL 132
           Q  V+ +L F++     P+R GRR+  S+
Sbjct: 66  QPSVYPLLRFENPETHHPIRHGRRQSRSM 94


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -1

Query: 193 NLSQVYMYHRYDKAVENMDRYNRF 122
           +LS  Y Y  Y+    N + YN +
Sbjct: 317 SLSNNYKYSNYNNYNNNYNNYNNY 340


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +1

Query: 424 DRGDFILLRIERGVVVLDWDFGSGTSTITIENIRVNDGER 543
           D G   LL   R   +   +FG  T  I   ++ +  GER
Sbjct: 155 DHGKTTLLDALRNTSIAKSEFGGITQCIGAFDVTLESGER 194


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +3

Query: 225 WICRRFLSNAFAITSKCRLQRQRICRIT 308
           W+    LS   +I + C +   R C IT
Sbjct: 117 WVSFDVLSCTASILNLCMISVDRFCAIT 144


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,404
Number of Sequences: 438
Number of extensions: 4219
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)