Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_M16
(620 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 29 0.41
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 0.41
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 0.54
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.54
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 29 0.54
SPCC1235.12c |mug146||meiotically upregulated gene Mug46|Schizos... 27 1.7
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 27 1.7
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 27 2.2
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 27 2.2
SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po... 27 2.2
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 27 2.2
SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr 3|... 27 2.9
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy... 26 3.8
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 26 5.1
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 25 8.8
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 29.5 bits (63), Expect = 0.41
Identities = 18/57 (31%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Frame = -3
Query: 165 PPEPPAAFIVGGDTGLHPVA---PCGRPTGPRPYLSPMGMGARIPLPDPQALSPPTS 4
PP PP A G P + P G P G GM A +PL + P +S
Sbjct: 1883 PPPPPMALPKAGPPSAAPTSALPPAGPPAGATAISGNPGMPAPVPLTGKETAVPLSS 1939
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.5 bits (63), Expect = 0.41
Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Frame = -3
Query: 162 PEPPAAFIVGGDTGLHP---VAPCGRPTGPRPYLSPMGMGARIPLPDPQALSPP 10
P PP A I+GG P VA G P P P + G+R P PQA P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803
Score = 26.2 bits (55), Expect = 3.8
Identities = 20/63 (31%), Positives = 23/63 (36%)
Frame = +2
Query: 44 ILAPIPIGLKYGRGPVGLPQGATGCNPVSPPTINAAGGSGGF*WVFPGASRPGESHTGAE 223
I P P + G P P G G P PP A +GG + P E E
Sbjct: 749 IPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEPKID-E 807
Query: 224 TSL 232
TSL
Sbjct: 808 TSL 810
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.1 bits (62), Expect = 0.54
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = -3
Query: 150 AAFIVGGDTGLHPVAPCGRPTGPRPYLSPMGMGARIPLPDPQALSPPTSS 1
AA + GG HPV+ P P+ P M A P P P ++ PP S+
Sbjct: 1674 AAKLFGGMAPAHPVST--PPVRPQSAAPPQ-MSAPTPPPPPMSVPPPPSA 1720
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.1 bits (62), Expect = 0.54
Identities = 24/71 (33%), Positives = 29/71 (40%)
Frame = -3
Query: 222 SAPVWDSPGREAPGNTH*NPPEPPAAFIVGGDTGLHPVAPCGRPTGPRPYLSPMGMGARI 43
S P +P P PP P + +G P AP P+ P P GM A
Sbjct: 413 STPPVPTPPSLPPSAPPSLPPSAPPSLPMGA-----PAAPPLPPSAPIAPPLPAGMPAAP 467
Query: 42 PLPDPQALSPP 10
PLP P A +PP
Sbjct: 468 PLP-PAAPAPP 477
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 29.1 bits (62), Expect = 0.54
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 32 SGSGILAPIPIGLKYGRGPVGLPQGATGCNPVSPP 136
SG G+ P G+ G+ PVGL G +PP
Sbjct: 96 SGPGVARPAGRGIPLGQAPVGLAGPVRGVGYTAPP 130
>SPCC1235.12c |mug146||meiotically upregulated gene
Mug46|Schizosaccharomyces pombe|chr 3|||Manual
Length = 311
Score = 27.5 bits (58), Expect = 1.7
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 489 VTHFFNIG*ISKTLKETYNHCLKYILHYAIF 397
+THF + S +++ T H K +LHY F
Sbjct: 51 LTHFLSSSENSSSVRNTRTHKFKQLLHYIFF 81
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 27.5 bits (58), Expect = 1.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 162 PEPPAAFIVGGDTGLHPVAPCG 97
P P +AF G +G +P AP G
Sbjct: 1017 PAPSSAFAFGNQSGTNPAAPAG 1038
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 27.1 bits (57), Expect = 2.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 258 ASAMGKGVRRDVSAPVWDSPGREAPGNT 175
AS +G G + + S V+D P R AP +T
Sbjct: 455 ASGLGSGFQDEDSYNVYDKPWRAAPSST 482
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 27.1 bits (57), Expect = 2.2
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 463 LSNIKKMCYRLKLKFAKEVSF 525
LS +K++CYRLK K ++F
Sbjct: 498 LSQLKRLCYRLKKKIETFINF 518
>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 348
Score = 27.1 bits (57), Expect = 2.2
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +2
Query: 92 GLPQGATGCNPVSPPTINAAGGSG 163
G P+GAT CN P N+A G
Sbjct: 239 GTPRGATNCNEGGCPRCNSASSCG 262
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 27.1 bits (57), Expect = 2.2
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 409 LRYIFILCTNPQNPYYLSQQYKAIYK 332
L++ + NPQ PY +Q + IYK
Sbjct: 319 LQHALVSAVNPQRPYLTQKQRRNIYK 344
>SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 347
Score = 26.6 bits (56), Expect = 2.9
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -1
Query: 188 RPEIPTKTPRSRPPHL*WGAIRDCTPSPPAAGPLGLV 78
R + TKT P+ G+IR C +PP GPL L+
Sbjct: 237 RTPMLTKTSSRPDPN---GSIRSCHFTPPNGGPLDLL 270
>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 516
Score = 26.2 bits (55), Expect = 3.8
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 34 RQRYSRPHPHWA*VWTRPSGPAAGGDGVQSRIAPHYKCGGRLRGV 168
RQR+ R HP W+ V R G GV++ + + RL+ +
Sbjct: 4 RQRFRRFHPRWSKVNLRGFGGVGALKGVKALNGMNVRVSMRLKWI 48
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 25.8 bits (54), Expect = 5.1
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +3
Query: 117 AIPYRPPL*MRRAAPGGFSGYFRALHARASPTLVRRRPSAPPY 245
A PY+ RA P +G+ R+LH SP RP +P Y
Sbjct: 321 ASPYKTMSLTDRAEPIVMNGHMRSLHNATSPF----RPFSPSY 359
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 421 IHSTLRYIFILCTNPQNPYY 362
++S +R IFI N +NPYY
Sbjct: 2380 LYSLIRLIFISQHNGKNPYY 2399
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,988,131
Number of Sequences: 5004
Number of extensions: 67984
Number of successful extensions: 168
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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