Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_M15
(645 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0304 - 33001393-33001527,33001627-33001764,33001861-330019... 31 1.0
08_01_0415 + 3687998-3688096,3688326-3688520,3689219-3689385,368... 29 2.4
01_05_0507 - 22800124-22800163,22800411-22800554,22801291-228018... 29 2.4
08_01_0106 - 762287-763393,763752-764414 29 3.2
06_03_0020 + 15515768-15517696 29 3.2
02_01_0714 + 5339408-5340020,5340117-5340319,5340408-5340605,534... 29 4.2
06_02_0085 + 11555539-11555632,11555767-11555867,11556947-115570... 28 5.5
12_02_1104 + 26121288-26122200,26122324-26122506,26122841-26124009 28 7.3
11_04_0031 - 12540955-12541048,12541127-12541188,12541306-12541590 28 7.3
07_01_0703 - 5295561-5297523,5299344-5299462 28 7.3
06_02_0200 - 12946139-12946282,12947636-12947842,12949506-129496... 27 9.7
>03_06_0304 -
33001393-33001527,33001627-33001764,33001861-33001938,
33002048-33002124,33003370-33003871
Length = 309
Score = 30.7 bits (66), Expect = 1.0
Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Frame = +1
Query: 187 SSPA*PSECSTARSILGTTPGRFILPNRTSATNC*DTHR---CSRTLRSLSSPKRSASPL 357
SSPA S S+A + LG PGR + T+A R T R LSS R+ S L
Sbjct: 11 SSPAASSSSSSAPAKLGAAPGRVAVRKLTAAATSLRLDRAPAAPATERGLSSVSRTMSRL 70
Query: 358 WE 363
E
Sbjct: 71 ME 72
>08_01_0415 +
3687998-3688096,3688326-3688520,3689219-3689385,
3689459-3689509,3689576-3689657,3689764-3689832,
3689939-3690109
Length = 277
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = -3
Query: 559 GYVVTAVDSGSNSLRSGL 506
G V+TAVDSG N+ R+GL
Sbjct: 94 GVVITAVDSGGNAARAGL 111
>01_05_0507 -
22800124-22800163,22800411-22800554,22801291-22801850,
22803207-22803264,22803885-22804124,22804191-22804315
Length = 388
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 231 IRHHSRPLYTPEPDVCHELLGH 296
+RHH L+ P PD H L+GH
Sbjct: 302 VRHHRWHLHFPSPDYRHILIGH 323
>08_01_0106 - 762287-763393,763752-764414
Length = 589
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 81 YREDNIPQLEDVSNFLKDCTGFTLRPVAGLLSSR 182
YRED+ + N L D GF +P GL+++R
Sbjct: 271 YREDDRVDVATPGNGLNDYLGFRAQPTLGLITAR 304
>06_03_0020 + 15515768-15517696
Length = 642
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -2
Query: 587 EIHWLVFRD-GVRRDSSRFWIELSK 516
E W + RD GV++D R WIEL K
Sbjct: 493 EKSWKMMRDRGVKKDPGRSWIELGK 517
>02_01_0714 +
5339408-5340020,5340117-5340319,5340408-5340605,
5340703-5340774,5341197-5341292,5341828-5341907,
5341993-5342068,5342152-5342362,5342562-5342755,
5342834-5342939,5343037-5343126,5343470-5344206
Length = 891
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 495 CLSDKPDLRE-FDPESTAVTTYPITEYQPVYFVAKQLRR 608
C S P + F+ ++ V P+ +Y P+ F+AK ++R
Sbjct: 830 CKSSLPSINGIFEQAASFVQAAPLRQYHPISFIAKGVKR 868
>06_02_0085 +
11555539-11555632,11555767-11555867,11556947-11557056,
11557152-11557227,11557412-11557555,11558432-11558503,
11558601-11559470
Length = 488
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +3
Query: 471 SSFGELQYCLSDKPDLREFDPESTA---VTTYPITEYQPVYFVAKQ 599
S++ Y +D P ++P+S + TYP T +QP Y + Q
Sbjct: 299 SNYSSPPYTRTDYPSSDSYNPQSNDKPDIPTYPHTYHQPPYTIEPQ 344
>12_02_1104 + 26121288-26122200,26122324-26122506,26122841-26124009
Length = 754
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +3
Query: 441 KLKAYGAGLLSSFGELQYCLSDKPDLREFDPESTAVTTYPITEYQPVY 584
K+ +GA L S E ++ L + + DPES T++ +TE VY
Sbjct: 573 KVADFGASTLKSMDESEFILFVQGTMGYLDPES--FTSHQLTERSDVY 618
>11_04_0031 - 12540955-12541048,12541127-12541188,12541306-12541590
Length = 146
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +3
Query: 441 KLKAYGAGLLSSFGEL--QYCLSDKPDLREFDPESTAVT 551
+L+A LL + L Q+C + P+L FDP+ VT
Sbjct: 102 RLRAVDTNLLKCYSLLSWQWCQENAPELAFFDPQVVTVT 140
>07_01_0703 - 5295561-5297523,5299344-5299462
Length = 693
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -2
Query: 383 LNVIIGCSQRGEADLLGELSERRVREQRCVS*QFVADVRFGS 258
LNV++ CS EA +L EL++ R + + F+ D+ F +
Sbjct: 474 LNVVLNCSNCSEAKVLTELAKSMGRCSQNLCKLFLEDMHFNA 515
>06_02_0200 -
12946139-12946282,12947636-12947842,12949506-12949629,
12950167-12950369,12950922-12951620,12951723-12951784,
12952395-12952404,12954905-12957631
Length = 1391
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
Frame = +3
Query: 27 HACKEHNHVFPLLIENCGYREDNIPQLEDVSNFLKDCTGFTLRPVAG-LLSSRDFLAGLA 203
H+C + V + G RE I S F C G + V G +L + L
Sbjct: 638 HSCNDSGSVLYIWDLKTGARERIITGTSSQSTFEHFCRGISKNAVTGSILGGTTSASSLL 697
Query: 204 FRVFHSTQYIRHHS 245
+F T ++ H+
Sbjct: 698 VPIFKDTSLLQSHA 711
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,070,272
Number of Sequences: 37544
Number of extensions: 409225
Number of successful extensions: 1022
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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