Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_M13
         (178 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    23   4.1  
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom...    23   5.4  
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    23   5.4  
SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1 |Schizos...    23   7.1  
SPAC1805.09c |fmt1||methionyl-tRNA formyltransferase Fmt1 |Schiz...    23   7.1  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    23   7.1  
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c...    23   7.1  
SPBC11G11.04 |trs20||TRAPP complex subunit Trs20 |Schizosaccharo...    23   7.1  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    22   9.4  

>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 68   LKWISCARFLYWVL 109
            LKW    RF YW L
Sbjct: 2153 LKWTEARRFFYWRL 2166


>SPBC947.12 |kms2||spindle pole body protein
           Kms2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 41  HINYFYYYNLKWISCARFLYWV 106
           HI YF ++++  I    FL+W+
Sbjct: 424 HIFYFLFFHVATIQQWPFLFWL 445


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 178 INNSRCFLSAFCILYSC 128
           +N  +CF  AFC +  C
Sbjct: 233 LNAKKCFTDAFCEILRC 249


>SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/28 (32%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = +1

Query: 79  KLCALLILGFIASQANC--MNIRYKRQI 156
           K CA++++ F+A++  C  +NI  + Q+
Sbjct: 175 KACAVVLVEFLATRLGCYLLNISSQSQV 202


>SPAC1805.09c |fmt1||methionyl-tRNA formyltransferase Fmt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 178 INNSRCFLSAFCILYSCSSPDWL 110
           +NN + FL     L+S S+ DW+
Sbjct: 260 LNNKKVFLYDVHPLHSTSAEDWI 282


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2244

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +3

Query: 105 FYSQSGELHEYKIQKADRKQREL 173
           FYS +GE+ +YK+   + + + +
Sbjct: 46  FYSVNGEMKDYKLMALELEDKSV 68


>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 489

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 41  HINYFYYYNLKWISCARFLYWVL 109
           H+N  YY++L+  S    L+WV+
Sbjct: 263 HLNS-YYFSLRTRSLNNVLFWVI 284


>SPBC11G11.04 |trs20||TRAPP complex subunit Trs20
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 136

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = -2

Query: 159 FYLPFVSYIHAVRLTGYKTQYKKRAQLIH 73
           FY+  +   H + ++ Y T    R  L+H
Sbjct: 57  FYMKTIDQFHEMYISAYVTPSNMRFMLLH 85


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 88   ALLILGFIASQANCMNIR 141
            ALLILGF  S  N + +R
Sbjct: 1019 ALLILGFDISSTNVITLR 1036


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 635,731
Number of Sequences: 5004
Number of extensions: 8182
Number of successful extensions: 24
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 2,362,478
effective HSP length: 39
effective length of database: 2,167,322
effective search space used: 41179118
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)