Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_M12
(623 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0921 + 21586034-21586229,21586464-21586576,21586768-215868... 49 3e-06
01_06_0628 + 30707353-30707548,30707846-30707958,30708090-307081... 48 5e-06
03_02_0387 - 8016399-8016575,8016661-8016788,8017073-8017214,801... 33 0.14
11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903 31 0.98
10_08_0672 + 19762340-19762432,19762543-19762735,19763225-197632... 31 0.98
10_07_0091 - 12774590-12774664,12774971-12775134,12775249-127753... 30 1.3
10_02_0148 - 5859664-5859828,5859916-5860043,5860310-5860451,586... 30 1.7
05_05_0226 + 23442971-23443857,23444209-23446324 29 3.0
04_03_0974 + 21367304-21369634 29 3.0
08_01_0344 + 3043824-3044123,3044260-3044314,3044810-3044985,304... 29 4.0
>10_08_0921 +
21586034-21586229,21586464-21586576,21586768-21586875,
21586967-21587205,21587301-21587399,21587448-21587535,
21587617-21587750,21588274-21588362,21588718-21588751,
21588830-21588898,21589216-21589339
Length = 430
Score = 49.2 bits (112), Expect = 3e-06
Identities = 22/72 (30%), Positives = 40/72 (55%)
Frame = +3
Query: 405 ADGAYPSALEGAENRRVTVWCANDYLGTSRHPSVQDAAISAIRSYGTGAGGTRNIAGNSQ 584
A+G S E + ++ ++ NDY+G S HP+++ AA+ A YG G G+ I G +
Sbjct: 64 AEGGEGSGQEEKVDEKLILFSGNDYMGLSSHPAIRHAAVKAAEEYGMGPRGSALICGYTT 123
Query: 585 MTEKLEAEISKL 620
+ +E +++L
Sbjct: 124 YHKMVEESLAEL 135
>01_06_0628 +
30707353-30707548,30707846-30707958,30708090-30708197,
30708305-30708543,30708774-30708861,30708942-30709075,
30709285-30709498,30709671-30709759,30710194-30710262,
30710560-30710683
Length = 457
Score = 48.4 bits (110), Expect = 5e-06
Identities = 21/72 (29%), Positives = 41/72 (56%)
Frame = +3
Query: 405 ADGAYPSALEGAENRRVTVWCANDYLGTSRHPSVQDAAISAIRSYGTGAGGTRNIAGNSQ 584
A+G + E + ++ ++ NDY+G S HP+++ AA+ A + YG G G+ I G +
Sbjct: 64 AEGGEATGQEEEVDEKLILFSGNDYMGLSSHPAIRKAAVKAAQEYGMGPRGSALICGYTT 123
Query: 585 MTEKLEAEISKL 620
+ +E +++L
Sbjct: 124 YHKLVEESLAEL 135
>03_02_0387 -
8016399-8016575,8016661-8016788,8017073-8017214,
8017301-8017396,8017572-8017712,8017857-8018031,
8018443-8018575,8018661-8018733,8018807-8018900,
8019890-8019981,8020091-8020185,8020267-8020378
Length = 485
Score = 33.5 bits (73), Expect = 0.14
Identities = 15/59 (25%), Positives = 30/59 (50%)
Frame = +3
Query: 441 ENRRVTVWCANDYLGTSRHPSVQDAAISAIRSYGTGAGGTRNIAGNSQMTEKLEAEISK 617
+ + V + + +YLG + + D+ + ++ YG G+ G R G + EA+I+K
Sbjct: 109 DGKEVINFASANYLGLIGNEKIIDSCVGSLEKYGVGSCGPRGFYGTIDVHLDCEAKIAK 167
>11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903
Length = 1135
Score = 30.7 bits (66), Expect = 0.98
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +3
Query: 69 ASVSVIDYIKMPCPFLGSLNQSFVRNYGSSLLKQYG 176
A VSV DY+K C G L + RN G+ L +Q G
Sbjct: 365 ALVSVSDYLKSSCEPTGELCANLCRNLGAHLKEQDG 400
>10_08_0672 +
19762340-19762432,19762543-19762735,19763225-19763269,
19763381-19763432,19763601-19763704,19763887-19763987,
19764225-19764283,19764536-19764592,19764944-19764989,
19765187-19765266,19766841-19767096,19767210-19767405,
19768368-19768448,19768536-19768587,19768759-19768862,
19769586-19769686,19769924-19769982,19770491-19770536,
19770789-19770868,19770953-19771013
Length = 621
Score = 30.7 bits (66), Expect = 0.98
Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 9/136 (6%)
Frame = +3
Query: 3 RLQCEPTLSTFKSR*IITIFRSASVSVIDYIKMPCPFL------GSLNQSFVRNYGSSLL 164
+L E L+T K R + I S ++ V ++ P FL G N+S NYG+S
Sbjct: 121 KLYHETALATGK-RILSLIALSLNLDV-EFFDCPVAFLRLLHYPGEANESDDGNYGASAH 178
Query: 165 KQYGKYCPIITRGF--LSLGNDETKCPFIQQNA-IISEAPAEMTEDIVESTKPYQYENFF 335
YG + T G L + ++ +CP + ++ I A D+++ + +
Sbjct: 179 SDYGVLTLVATDGTPGLQICREKDRCPQLWEDVHHIEGALIVNIGDLLQRWTNCVFRSTL 238
Query: 336 HEQISAKKKDYSYRVF 383
H ++ K+ YS F
Sbjct: 239 HRVVAVGKERYSVAFF 254
>10_07_0091 -
12774590-12774664,12774971-12775134,12775249-12775382,
12775463-12775556,12775650-12775758,12776055-12776103,
12778336-12778376,12779539-12779571,12779665-12779754,
12780474-12780507,12781218-12781510,12781859-12782057,
12782129-12782289,12783130-12783282,12783545-12783715,
12783822-12783921,12784023-12784111,12784192-12784290,
12784406-12784676,12784764-12784961,12785041-12785140,
12785799-12785931,12786016-12786277,12787106-12787155
Length = 1033
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +3
Query: 81 VIDYIKMPCPFLGSLNQSFVRNYGSSLLKQYGKYCPIITRGFLS 212
V+ + CP L SL+ SF R L Q + CP+I LS
Sbjct: 576 VLSQASINCPRLTSLDASFCRKLMDDSLSQTAEACPLIENLILS 619
>10_02_0148 -
5859664-5859828,5859916-5860043,5860310-5860451,
5860548-5860643,5860836-5860976,5861799-5861973,
5862416-5862702,5862777-5862870,5863244-5863335,
5863459-5863553,5863648-5863759
Length = 508
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/45 (24%), Positives = 24/45 (53%)
Frame = +3
Query: 441 ENRRVTVWCANDYLGTSRHPSVQDAAISAIRSYGTGAGGTRNIAG 575
+ + V + + +YLG + + D+ + ++ YG G+ G R+ G
Sbjct: 109 DGKEVVNFASANYLGLIGNEKIIDSCVGSVEKYGVGSCGPRSFYG 153
>05_05_0226 + 23442971-23443857,23444209-23446324
Length = 1000
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = +3
Query: 69 ASVSVIDYIKMPCPFLGSLNQSFVRNYGSSLLKQYGKY 182
A VSV DY+K G L RN GS L +Q G Y
Sbjct: 386 ALVSVSDYLKSSNEPTGELCAKLCRNLGSHLKEQDGHY 423
>04_03_0974 + 21367304-21369634
Length = 776
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 501 SVQDAAISAIRSYGTGAGGTRNIAGNSQMTEKLEAEISKLH 623
S D A +A + G GAGG R+I G S ++ A + L+
Sbjct: 341 STIDRAFTATVTLGAGAGGARSIVGRSVYPGRVPAGAAALY 381
>08_01_0344 + 3043824-3044123,3044260-3044314,3044810-3044985,
3045083-3045283,3045383-3045642,3045909-3046222,
3046399-3046622,3047046-3047398,3047709-3047826,
3047875-3048133,3048252-3049729
Length = 1245
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/83 (20%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Frame = +3
Query: 48 IITIFRSASVSVIDYIKMPCPFLGSLNQSFVRN--YGSSLLKQYGKYCPIITRGFLSLGN 221
+++++ + + ++ + MPC F+G L Q+ YG S + + +++ + N
Sbjct: 807 VVSMYVNWRMGLVSWAVMPCHFIGGLIQAKAAKGFYGDSAI----AHQELVSLASEAASN 862
Query: 222 DETKCPFIQQNAIISEAPAEMTE 290
T F+ ++ II +A + E
Sbjct: 863 IRTVASFVYEDEIIKKAELSLQE 885
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,868,104
Number of Sequences: 37544
Number of extensions: 355949
Number of successful extensions: 1057
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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